Variant report

Variant	rs34112193
Chromosome Location	chr11:64172207-64172208
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12786847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35169799	1.00[AFR][1000 genomes]
rs35583126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35864060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56271783	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64168000-64173400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr11:64168200-64173000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:64168400-64173600	Weak transcription	Spleen	Spleen
4	chr11:64170800-64173600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:64171000-64175200	Weak transcription	Fetal Brain Male	brain
6	chr11:64171400-64173000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr11:64171400-64173000	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr11:64171600-64172600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:64172000-64173600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:64172200-64172400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:64172200-64172400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:64172200-64173000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links