Variant report

Variant	rs34117913
Chromosome Location	chr2:86003597-86003598
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:85997012..86000139-chr2:86001257..86004684,4	MCF-7	breast:
2	chr2:86003504..86005582-chr2:86005800..86007921,2	K562	blood:
3	chr2:85995337..85997377-chr2:86000338..86004148,3	K562	blood:
4	chr2:86001369..86004244-chr2:86027552..86029124,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1055770	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11679995	0.83[ASN][1000 genomes]
rs11691015	0.83[ASN][1000 genomes]
rs13001375	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13035450	0.83[ASN][1000 genomes]
rs13388951	0.83[ASN][1000 genomes]
rs34027204	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34284678	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35074676	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4832014	0.83[ASN][1000 genomes]
rs4832199	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4832201	0.83[ASN][1000 genomes]
rs55974755	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71392945	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs736991	0.90[EUR][1000 genomes]
rs748064	0.83[ASN][1000 genomes]
rs750442	0.90[EUR][1000 genomes]
rs750443	0.90[EUR][1000 genomes]
rs7576412	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7609043	0.83[ASN][1000 genomes]
rs7609084	0.83[ASN][1000 genomes]
rs7609441	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874469	chr2:85973618-86025251	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv874470	chr2:85973618-86028257	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv874471	chr2:85976645-86021919	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv1001792	chr2:85983107-86016722	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv535805	chr2:85983107-86016722	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv535806	chr2:85990408-86007918	Enhancers Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:85999400-86003600	Weak transcription	Gastric	stomach
2	chr2:86000200-86010400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:86000400-86004400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:86000400-86006000	Enhancers	Fetal Heart	heart
5	chr2:86000400-86008200	Enhancers	Psoas Muscle	Psoas
6	chr2:86000600-86003600	Weak transcription	Pancreas	Pancrea
7	chr2:86000600-86009200	Enhancers	Right Atrium	heart
8	chr2:86001000-86003800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr2:86001000-86004000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr2:86001000-86006800	Weak transcription	Stomach Mucosa	stomach
11	chr2:86001000-86008200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr2:86001200-86003600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr2:86001200-86004400	Weak transcription	Brain Anterior Caudate	brain
14	chr2:86001200-86004600	Weak transcription	Fetal Intestine Large	intestine
15	chr2:86001200-86012800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr2:86001400-86004600	Weak transcription	Brain Substantia Nigra	brain
17	chr2:86001400-86023000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr2:86001600-86003600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr2:86001600-86005400	Strong transcription	Osteobl	bone
20	chr2:86001600-86006600	Enhancers	Left Ventricle	heart
21	chr2:86001600-86011800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr2:86001600-86020000	Weak transcription	Fetal Brain Female	brain
23	chr2:86001600-86023000	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr2:86001800-86004400	Weak transcription	NHLF	lung
25	chr2:86001800-86006000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr2:86001800-86014200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr2:86002000-86004600	Weak transcription	Brain Angular Gyrus	brain
28	chr2:86002000-86004600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr2:86002000-86005000	Weak transcription	Fetal Brain Male	brain
30	chr2:86002000-86005400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr2:86002000-86005800	Weak transcription	Hela-S3	cervix
32	chr2:86002000-86006000	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr2:86002200-86003600	Strong transcription	HSMM	muscle
34	chr2:86002200-86004000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr2:86002200-86004400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr2:86002200-86004400	Weak transcription	HUVEC	blood vessel
37	chr2:86002200-86004600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr2:86002200-86005000	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr2:86002200-86005600	Weak transcription	Colonic Mucosa	Colon
40	chr2:86002200-86006000	Weak transcription	NHDF-Ad	bronchial
41	chr2:86002200-86008200	Genic enhancers	Stomach Smooth Muscle	stomach
42	chr2:86002200-86012600	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr2:86002200-86015800	Weak transcription	A549	lung
44	chr2:86002400-86004000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr2:86002400-86004200	Genic enhancers	Skeletal Muscle Male	skeletal muscle
46	chr2:86002400-86005800	Enhancers	Right Ventricle	heart
47	chr2:86002400-86011200	Weak transcription	Rectal Smooth Muscle	rectum
48	chr2:86002600-86004400	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr2:86002600-86004400	Weak transcription	Brain Germinal Matrix	brain
50	chr2:86002600-86004600	Weak transcription	Brain Hippocampus Middle	brain

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