Variant report

Variant	rs34124057
Chromosome Location	chr9:93589314-93589315
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr9:93589162-93590218	GM12878	blood:	n/a	chr9:93589221-93589231 chr9:93590043-93590051
2	PML	chr9:93589302-93590115	GM12878	blood:	n/a	chr9:93589732-93589740
3	POLR2A	chr9:93589274-93590179	GM12892	blood:	n/a	n/a
4	BHLHE40	chr9:93589308-93590101	GM12878	blood:	n/a	n/a
5	SPI1	chr9:93589289-93590135	HL-60	blood:	n/a	chr9:93589616-93589629
6	POLR2A	chr9:93589234-93590152	GM12892	blood:	n/a	n/a
7	POLR2A	chr9:93587623-93591347	GM12891	blood:	n/a	n/a
8	MTA3	chr9:93589011-93590179	GM12878	blood:	n/a	n/a
9	MTA3	chr9:93589277-93590167	GM12878	blood:	n/a	n/a
10	BCLAF1	chr9:93589206-93590120	GM12878	blood:	n/a	n/a
11	NFIC	chr9:93589306-93590095	GM12878	blood:	n/a	n/a
12	POLR2A	chr9:93589279-93590199	GM12878	blood:	n/a	n/a
13	RCOR1	chr9:93589299-93590094	GM12878	blood:	n/a	n/a
14	STAT5A	chr9:93589284-93589871	GM12878	blood:	n/a	chr9:93589789-93589801
15	SPI1	chr9:93589064-93590128	GM12878	blood:	n/a	chr9:93589616-93589629

Variant related genes	Relation type
SYK	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs34748956	1.00[AFR][1000 genomes]
rs35672759	1.00[AFR][1000 genomes]
rs56259859	1.00[AFR][1000 genomes]
rs71489500	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv893567	chr9:93519280-93609668	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv831652	chr9:93527411-93696923	Bivalent Enhancer Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1038685	chr9:93556174-93685729	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93565000-93609000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:93567800-93597400	Weak transcription	Gastric	stomach
3	chr9:93572600-93591000	Weak transcription	Lung	lung
4	chr9:93573200-93589600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr9:93577000-93598800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:93577800-93606200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:93578600-93592400	Weak transcription	Esophagus	oesophagus
8	chr9:93580800-93603400	Weak transcription	K562	blood
9	chr9:93581200-93593400	Weak transcription	Stomach Mucosa	stomach
10	chr9:93582600-93595200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr9:93583000-93599600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr9:93585400-93593200	Weak transcription	Fetal Intestine Small	intestine
13	chr9:93585400-93594600	Weak transcription	Fetal Intestine Large	intestine
14	chr9:93585400-93594800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr9:93585600-93590800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr9:93585600-93607800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr9:93587600-93589600	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr9:93587800-93589600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr9:93587800-93591200	Enhancers	Fetal Thymus	thymus
20	chr9:93588000-93589600	Enhancers	Thymus	Thymus
21	chr9:93588200-93590200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr9:93588400-93589800	Enhancers	Duodenum Mucosa	Duodenum
23	chr9:93588600-93589400	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr9:93588600-93590200	Flanking Active TSS	Primary B cells from peripheral blood	blood
25	chr9:93588800-93589800	Enhancers	Fetal Stomach	stomach
26	chr9:93589000-93590000	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr9:93589000-93590200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
28	chr9:93589000-93590200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr9:93589000-93590200	Flanking Active TSS	GM12878-XiMat	blood
30	chr9:93589200-93589400	Enhancers	Rectal Mucosa Donor 29	rectum
31	chr9:93589200-93590200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr9:93589200-93590400	Flanking Active TSS	Primary hematopoietic stem cells	blood
33	chr9:93589200-93592200	Flanking Active TSS	Primary B cells from cord blood	blood
34	chr9:93589200-93592400	Weak transcription	Spleen	Spleen
35	chr9:93589200-93606000	Weak transcription	Colonic Mucosa	Colon

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