Variant report

Variant	rs34125273
Chromosome Location	chr3:100519058-100519059
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1796184	chr3:100507827-100522384	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv591170	chr3:100514481-100522220	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv1795329	chr3:100514481-100522384	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1803695	chr3:100514481-100522384	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv591171	chr3:100516767-100522220	Enhancers Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv591172	chr3:100516767-100522384	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1798221	chr3:100518650-100536284	Genic enhancers Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv1987259	chr3:100519058-100519059	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100475600-100520000	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:100494800-100523400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:100502400-100530400	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:100505200-100558200	Weak transcription	Ovary	ovary
5	chr3:100505200-100582800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr3:100506000-100548400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr3:100513600-100523000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:100514200-100547600	Weak transcription	Fetal Muscle Leg	muscle
9	chr3:100514400-100529000	Weak transcription	HSMMtube	muscle
10	chr3:100515400-100521800	Enhancers	NHDF-Ad	bronchial
11	chr3:100515600-100519200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr3:100515600-100522600	Weak transcription	Osteobl	bone
13	chr3:100516000-100523000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:100516000-100572200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:100516400-100519200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr3:100517400-100523400	Weak transcription	HSMM	muscle
17	chr3:100517400-100594400	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr3:100518600-100519400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr3:100518600-100519800	Enhancers	NHEK	skin
20	chr3:100518800-100519600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr3:100518800-100543000	Weak transcription	Fetal Stomach	stomach
22	chr3:100519000-100523400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links