Variant report

Variant	rs34136796
Chromosome Location	chr3:50337032-50337033
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:50335795-50338360	HepG2	liver:	n/a	n/a
2	SP1	chr3:50336328-50337316	A549	lung:	n/a	chr3:50337065-50337077 chr3:50336965-50336977 chr3:50336896-50336908 chr3:50337065-50337077 chr3:50337066-50337075 chr3:50336380-50336390 chr3:50337097-50337106 chr3:50337098-50337111 chr3:50337097-50337106 chr3:50337096-50337108 chr3:50336381-50336390 chr3:50336965-50336977 chr3:50336913-50336922 chr3:50337066-50337080 chr3:50336380-50336390 chr3:50337097-50337107 chr3:50337096-50337108 chr3:50337098-50337107 chr3:50336897-50336906 chr3:50337067-50337076 chr3:50336380-50336389 chr3:50336896-50336908 chr3:50336379-50336391 chr3:50336379-50336391 chr3:50336367-50336379 chr3:50336440-50336454 chr3:50336966-50336980 chr3:50336368-50336378
3	CTCF	chr3:50336920-50337070	GM12864	blood:	n/a	n/a
4	TCF12	chr3:50336219-50337339	ECC-1	luminal epithelium:	n/a	chr3:50337141-50337151 chr3:50337076-50337083 chr3:50337308-50337317
5	TAF1	chr3:50336448-50337316	H1-neurons	neurons:	n/a	n/a
6	MAX	chr3:50336168-50337372	GM12878	blood:	n/a	chr3:50336440-50336450 chr3:50336380-50336390
7	MXI1	chr3:50336202-50337319	GM12878	blood:	n/a	n/a
8	TBP	chr3:50336234-50337747	Hela-S3	cervix:	n/a	n/a
9	STAT3	chr3:50336991-50337622	MCF10A-Er-Src	breast:	n/a	n/a
10	MXI1	chr3:50336304-50337968	Hela-S3	cervix:	n/a	n/a
11	JUND	chr3:50336677-50337372	HepG2	liver:	n/a	chr3:50336924-50336936 chr3:50337233-50337242
12	POLR2A	chr3:50335828-50337929	HepG2	liver:	n/a	n/a
13	JUND	chr3:50336627-50337829	HepG2	liver:	n/a	chr3:50336924-50336936 chr3:50337233-50337242
14	POLR2A	chr3:50336044-50338389	HepG2	liver:	n/a	n/a
15	POLR2A	chr3:50336515-50337438	HepG2	liver:	n/a	n/a
16	POLR2A	chr3:50336094-50337984	GM19099	blood:	n/a	n/a
17	CEBPB	chr3:50336881-50337107	K562	blood:	n/a	n/a
18	POLR2A	chr3:50336101-50338003	HCT-116	colon:	n/a	n/a
19	MYC	chr3:50336976-50337084	HepG2	liver:	n/a	n/a
20	POLR2A	chr3:50336990-50337468	GM12892	blood:	n/a	n/a
21	POLR2A	chr3:50335773-50338119	K562	blood:	n/a	n/a
22	POLR2A	chr3:50335711-50338284	HL-60	blood:	n/a	n/a
23	POLR2A	chr3:50336174-50337537	ECC-1	luminal epithelium:	n/a	n/a
24	SP1	chr3:50336601-50337515	HepG2	liver:	n/a	chr3:50337065-50337077 chr3:50336965-50336977 chr3:50336896-50336908 chr3:50337065-50337077 chr3:50337066-50337075 chr3:50337097-50337106 chr3:50337098-50337111 chr3:50337097-50337106 chr3:50337096-50337108 chr3:50336965-50336977 chr3:50336913-50336922 chr3:50337066-50337080 chr3:50337097-50337107 chr3:50337096-50337108 chr3:50337098-50337107 chr3:50336897-50336906 chr3:50337067-50337076 chr3:50336896-50336908 chr3:50336966-50336980
25	NRF1	chr3:50336232-50337652	SK-N-SH	brain:	n/a	chr3:50336380-50336389
26	MAX	chr3:50336380-50337453	A549	lung:	n/a	chr3:50336440-50336450 chr3:50336380-50336390
27	POLR2A	chr3:50335760-50338326	HepG2	liver:	n/a	n/a
28	SP1	chr3:50336064-50337371	H1-hESC	embryonic stem cell:	n/a	chr3:50337065-50337077 chr3:50336202-50336214 chr3:50336965-50336977 chr3:50336896-50336908 chr3:50337065-50337077 chr3:50337066-50337075 chr3:50336380-50336390 chr3:50337097-50337106 chr3:50337098-50337111 chr3:50337097-50337106 chr3:50336204-50336213 chr3:50337096-50337108 chr3:50336381-50336390 chr3:50336965-50336977 chr3:50336203-50336217 chr3:50336913-50336922 chr3:50337066-50337080 chr3:50336380-50336390 chr3:50337097-50337107 chr3:50337096-50337108 chr3:50337098-50337107 chr3:50336897-50336906 chr3:50337067-50337076 chr3:50336380-50336389 chr3:50336896-50336908 chr3:50336379-50336391 chr3:50336379-50336391 chr3:50336367-50336379 chr3:50336440-50336454 chr3:50336966-50336980 chr3:50336368-50336378
29	ZNF143	chr3:50336345-50337219	GM12878	blood:	n/a	n/a
30	CEBPB	chr3:50336631-50338121	HepG2	liver:	n/a	n/a
31	POLR2A	chr3:50336048-50337467	GM18505	blood:	n/a	n/a
32	CREB1	chr3:50336345-50337502	K562	blood:	n/a	n/a
33	HCFC1	chr3:50335896-50338321	Hela-S3	cervix:	n/a	n/a
34	FOXA1	chr3:50336978-50337590	HepG2	liver:	n/a	n/a
35	FOS	chr3:50336760-50337833	MCF10A-Er-Src	breast:	n/a	chr3:50336924-50336936 chr3:50337512-50337523 chr3:50337233-50337242
36	FOS	chr3:50336760-50337594	MCF10A-Er-Src	breast:	n/a	chr3:50336924-50336936 chr3:50337512-50337523 chr3:50337233-50337242
37	IRF1	chr3:50336194-50337419	K562	blood:	n/a	chr3:50337063-50337077 chr3:50336894-50336908 chr3:50336379-50336393 chr3:50336963-50336977 chr3:50337094-50337108
38	MAX	chr3:50336336-50337521	K562	blood:	n/a	chr3:50336440-50336450 chr3:50336380-50336390
39	ZKSCAN1	chr3:50336502-50337356	Hela-S3	cervix:	n/a	n/a
40	RCOR1	chr3:50335885-50337415	K562	blood:	n/a	n/a
41	POLR2A	chr3:50336362-50337322	H1-hESC	embryonic stem cell:	n/a	n/a
42	RFX5	chr3:50336493-50337264	GM12878	blood:	n/a	n/a
43	SIN3A	chr3:50336248-50337333	H1-hESC	embryonic stem cell:	n/a	chr3:50336813-50336822 chr3:50337088-50337101
44	ARID3A	chr3:50336579-50337462	HepG2	liver:	n/a	n/a
45	MAZ	chr3:50336250-50337256	HepG2	liver:	n/a	chr3:50336440-50336450 chr3:50336380-50336390
46	POLR2A	chr3:50336073-50337348	GM19193	blood:	n/a	n/a
47	E2F4	chr3:50336379-50337323	K562	blood:	n/a	chr3:50337232-50337241 chr3:50337128-50337139 chr3:50337284-50337294 chr3:50337234-50337243 chr3:50337067-50337076 chr3:50337062-50337072
48	USF1	chr3:50337005-50337358	HepG2	liver:	n/a	chr3:50337073-50337089 chr3:50337172-50337183 chr3:50337065-50337081
49	EP300	chr3:50336645-50337558	GM12878	blood:	n/a	chr3:50337307-50337317
50	JUND	chr3:50335875-50337502	K562	blood:	n/a	chr3:50336924-50336936 chr3:50337233-50337242

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:50336986-50337036	AG04450	lung:	fetal
2	chr3:50336986-50337036	CMK	blood:	n/a
3	chr3:50336986-50337036	HRPEpiC	eye:	n/a
4	chr3:50336986-50337036	ECC-1	luminal epithelium:	n/a
5	chr3:50336986-50337036	SAEC	small airway:	n/a
6	chr3:50336986-50337036	HAEpiC	amniotic membrane:	n/a
7	chr3:50336986-50337036	HEEpiC	esophagus:	n/a
8	chr3:50336986-50337036	H1-hESC	embryonic stem cell:	embryo
9	chr3:50336986-50337036	AG04449	skin:	fetal
10	chr3:50336986-50337036	BE2_C	brain:	n/a
11	chr3:50336986-50337036	Hepatocyte	liver:	n/a
12	chr3:50336986-50337036	NHBE	bronchial:	n/a
13	chr3:50336986-50337036	Hela-S3	cervix:	n/a
14	chr3:50336986-50337036	MCF-7	breast:	n/a
15	chr3:50336986-50337036	K562	blood:	n/a
16	chr3:50336986-50337036	SK-N-MC	brain:	n/a
17	chr3:50336986-50337036	T-47D	breast:	n/a
18	chr3:50336986-50337036	HMEC	breast:	n/a
19	chr3:50336986-50337036	NHDF-neo	bronchial:	n/a
20	chr3:50336986-50337036	A549	lung:	n/a
21	chr3:50336986-50337036	LNCaP	prostate:	n/a
22	chr3:50336986-50337036	GM12891	blood:	n/a
23	chr3:50336986-50337036	HL-60	blood:	n/a
24	chr3:50336986-50337036	HRE	kidney:	n/a
25	chr3:50336986-50337036	GM19239	blood:	n/a
26	chr3:50336986-50337036	HRCEpiC	kidney:	n/a
27	chr3:50336986-50337036	ovcar-3	ovarian:	n/a
28	chr3:50336986-50337036	ProgFib	skin:	n/a
29	chr3:50336986-50337036	HCM	heart:	n/a
30	chr3:50336986-50337036	RPTEC	kidney:	n/a
31	chr3:50336986-50337036	GM12878	blood:	n/a
32	chr3:50336986-50337036	AG10803	skin:	n/a
33	chr3:50336986-50337036	HNPCEpiC	eye:	n/a
34	chr3:50336986-50337036	SK-N-SH_RA	brain:	n/a
35	chr3:50336986-50337036	PFSK-1	brain:	n/a
36	chr3:50336986-50337036	AG09309	skin:	n/a
37	chr3:50336986-50337036	MCF10A-Er-Src	breast:	n/a
38	chr3:50336986-50337036	AG09319	gingival:	n/a
39	chr3:50336986-50337036	HEK293	kidney:	embryo
40	chr3:50336986-50337036	HPAEpiC	pulmonary alveolar:	n/a
41	chr3:50336986-50337036	BJ	skin:	n/a
42	chr3:50336986-50337036	NH-A	brain:	n/a
43	chr3:50336986-50337036	HCT-116	colon:	n/a
44	chr3:50336986-50337036	GM12892	blood:	n/a
45	chr3:50336986-50337036	HUVEC	blood vessel:	n/a
46	chr3:50336986-50337036	SK-N-SH	brain:	n/a
47	chr3:50336986-50337036	Caco-2	colon:	n/a
48	chr3:50336986-50337036	Jurkat	blood:	n/a
49	chr3:50336986-50337036	GM06990	blood:	n/a
50	chr3:50336986-50337036	HCPEpiC	choroid plexus:	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:50296030..50318456-chr3:50318822..50339499,66	MCF-7	breast:
2	chr3:50334511..50339320-chr3:50364012..50367102,8	MCF-7	breast:
3	chr3:50335402..50338508-chr3:50371973..50376083,5	K562	blood:
4	chr3:50310399..50313142-chr3:50335615..50338582,3	K562	blood:
5	chr3:50336893..50339632-chr3:50360083..50363669,3	MCF-7	breast:
6	chr15:59041650..59042242-chr3:50336459..50337109,2	Hela-S3	cervix:
7	chr3:50327926..50342388-chr3:50350886..50359960,36	MCF-7	breast:
8	chr3:50324564..50342616-chr3:50350801..50362499,49	MCF-7	breast:
9	chr17:79633334..79633968-chr3:50336611..50337320,2	Hela-S3	cervix:
10	chr12:6561022..6561774-chr3:50336490..50337057,2	NB4	blood:
11	chr3:50334885..50342502-chr3:50352987..50366859,26	K562	blood:
12	chr3:50295925..50299690-chr3:50335868..50338319,4	K562	blood:
13	chr3:50333907..50338508-chr3:50371973..50376030,7	K562	blood:
14	chr3:50297731..50299690-chr3:50335668..50338319,3	K562	blood:
15	chr3:50335131..50340487-chr3:50360694..50367461,13	K562	blood:
16	chr3:50334334..50341950-chr3:50357130..50360296,11	K562	blood:
17	chr3:50336373..50338366-chr3:50377598..50379105,2	K562	blood:
18	chr3:50272615..50275191-chr3:50335158..50337593,2	MCF-7	breast:

Variant related genes	Relation type
NAT6	TF binding region
HYAL3	TF binding region
HYAL3	CpG island
NAT6	CpG island
ENSG00000139192	Chromatin interaction
ENSG00000185298	Chromatin interaction
ENSG00000179564	Chromatin interaction
ENSG00000204237	Chromatin interaction
ENSG00000012171	Chromatin interaction
ENSG00000232352	Chromatin interaction
ENSG00000068028	Chromatin interaction
ENSG00000235058	Chromatin interaction
ENSG00000230454	Chromatin interaction
ENSG00000114383	Chromatin interaction
ENSG00000114353	Chromatin interaction
ENSG00000137845	Chromatin interaction
ENSG00000068001	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1046956	0.82[CEU][hapmap]
rs11919418	0.83[CEU][hapmap]
rs12632110	0.83[CEU][hapmap]
rs12637671	0.83[CEU][hapmap]
rs13067082	0.83[CEU][hapmap]
rs13100173	0.83[GIH][hapmap]
rs2236940	0.83[CEU][hapmap]
rs2236941	0.83[CEU][hapmap]
rs2236947	0.84[GIH][hapmap];0.92[JPT][hapmap]
rs2624833	0.83[CEU][hapmap]
rs35926495	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56048629	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523662	chr3:50144951-50584999	Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	nsv1013949	chr3:50151712-50339163	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
3	nsv876769	chr3:50155468-50408398	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
4	esv1821728	chr3:50156142-50657253	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
5	esv1793751	chr3:50157364-50476363	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
6	esv1828162	chr3:50157364-50506151	Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
7	nsv590251	chr3:50158774-50337422	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
8	nsv470561	chr3:50158774-50584999	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
9	nsv876770	chr3:50158774-50609624	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
10	nsv523560	chr3:50172397-50339163	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
11	nsv1014256	chr3:50187646-50339163	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
12	nsv536565	chr3:50187646-50339163	Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
13	nsv1001993	chr3:50187646-50640808	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
14	nsv590253	chr3:50196418-50337422	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
15	esv2757870	chr3:50198478-50371377	Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
16	esv2759148	chr3:50198478-50371377	Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
17	nsv834692	chr3:50198485-50393464	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
18	nsv590254	chr3:50243510-50388607	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
19	nsv460531	chr3:50247824-50436827	Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
20	nsv590255	chr3:50247824-50436827	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
21	nsv876772	chr3:50255305-50436827	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
22	nsv590257	chr3:50302830-50393640	Genic enhancers Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
23	nsv590256	chr3:50302830-50420554	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
24	nsv876774	chr3:50302830-50436827	Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
25	nsv876773	chr3:50302830-50480131	Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
26	nsv834693	chr3:50302830-50507964	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
27	nsv876775	chr3:50324672-50504896	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs34136796	RNF123	cis	parietal	SCAN
rs34136796	HYAL3	cis	Esophagus Muscularis	GTEx
rs34136796	HYAL3	cis	Thyroid	GTEx
rs34136796	GNL3	cis	parietal	SCAN
rs34136796	RNF123	cis	cerebellum	SCAN
rs34136796	ARIH2	cis	cerebellum	SCAN
rs34136796	RBM6	Cis_1M	lymphoblastoid	RTeQTL
rs34136796	RBM6	cis	cerebellum	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50335200-50338000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:50335600-50337200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr3:50335600-50337400	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr3:50335800-50337200	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr3:50335800-50337200	Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr3:50335800-50337200	Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr3:50335800-50337400	Active TSS	H9 Cell Line	embryonic stem cell
8	chr3:50335800-50337400	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr3:50335800-50337400	Active TSS	HSMMtube	muscle
10	chr3:50335800-50338200	Flanking Active TSS	Stomach Smooth Muscle	stomach
11	chr3:50336000-50337200	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr3:50336000-50337200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:50336000-50337400	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr3:50336000-50337400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr3:50336000-50337400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr3:50336000-50337400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:50336000-50337400	Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr3:50336000-50337400	Active TSS	A549	lung
19	chr3:50336000-50337600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
20	chr3:50336000-50337600	Active TSS	Ovary	ovary
21	chr3:50336200-50337200	Active TSS	H1 Cell Line	embryonic stem cell
22	chr3:50336200-50337200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr3:50336200-50337200	Active TSS	HUES6 Cell Line	embryonic stem cell
24	chr3:50336200-50337200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:50336200-50337200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
26	chr3:50336200-50337200	Active TSS	GM12878-XiMat	blood
27	chr3:50336200-50337200	Active TSS	Hela-S3	cervix
28	chr3:50336200-50337200	Bivalent/Poised TSS	HepG2	liver
29	chr3:50336200-50337400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr3:50336200-50337400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr3:50336200-50337400	Active TSS	Colon Smooth Muscle	Colon
32	chr3:50336200-50337400	Active TSS	Fetal Brain Female	brain
33	chr3:50336200-50337400	Active TSS	Fetal Kidney	kidney
34	chr3:50336200-50337400	Active TSS	K562	blood
35	chr3:50336200-50337400	Active TSS	NHDF-Ad	bronchial
36	chr3:50336200-50337600	Active TSS	Esophagus	oesophagus
37	chr3:50336200-50337600	Active TSS	Gastric	stomach
38	chr3:50336200-50337800	Active TSS	Aorta	Aorta
39	chr3:50336400-50337200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr3:50336400-50337200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr3:50336400-50337200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr3:50336400-50337200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
43	chr3:50336400-50337200	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
44	chr3:50336400-50337200	Active TSS	Primary T helper cells PMA-I stimulated	--
45	chr3:50336400-50337200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
46	chr3:50336400-50337200	Active TSS	Primary T killer memory cells from peripheral blood	blood
47	chr3:50336400-50337200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr3:50336400-50337200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr3:50336400-50337200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr3:50336400-50337200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

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