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Variant report
Variant
rs34138574
Chromosome Location
chr11:59232186-59232187
allele
-/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:5)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
(count:5 , 50 per page) page:
1
No.
Transcrition factor
Chromosome Location
Cell Line
Cell type
Cell Stage
Matched TF binding sites
1
SPI1
chr11:59232098-59232291
K562
blood:
n/a
n/a
2
SPI1
chr11:59232054-59232336
GM12891
blood:
n/a
n/a
3
SPI1
chr11:59232097-59232318
K562
blood:
n/a
n/a
4
SPI1
chr11:59232169-59232286
GM12878
blood:
n/a
n/a
5
SPI1
chr11:59232151-59232334
GM12878
blood:
n/a
n/a
No data
No data
No data
No data
No data
Variant related genes
Relation type
ENSG00000254640
TF binding region
Extended variants information (count: 3 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv1046084
chr11:59034871-59314519
Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh
TF binding regionCpG islandChromatin interactive regionlncRNA
24 gene(s)
inside rSNPs
diseases
2
nsv975342
chr11:59203908-59237268
Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS
TF binding regionCpG island
3 gene(s)
inside rSNPs
diseases
3
esv274882
chr11:59231081-59236770
Enhancers
TF binding region
1 gene(s)
inside rSNPs
n/a
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links