Variant report

Variant	rs34142384
Chromosome Location	chr19:53600639-53600640
allele	AT/GC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:53600011..53602788-chr19:53603096..53607332,6	MCF-7	breast:
2	chr19:53598253..53601018-chr19:53604672..53606722,3	MCF-7	breast:
3	chr19:53596128..53598162-chr19:53599456..53601173,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170949	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530807	chr19:53210488-53695881	Strong transcription Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv3326632	chr19:53371248-53697569	Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	esv2758506	chr19:53410459-53652575	ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	esv2758769	chr19:53410459-53652575	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv428370	chr19:53410459-53652575	Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv1065143	chr19:53507142-53853363	Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
7	nsv544063	chr19:53507142-53853363	ZNF genes & repeats Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
8	nsv1058019	chr19:53507142-53904508	ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
9	nsv544064	chr19:53507142-53904508	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
10	nsv912342	chr19:53581151-54010759	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
11	nsv1063630	chr19:53591444-54419183	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	282 gene(s)	inside rSNPs	diseases
12	nsv580068	chr19:53594806-53623771	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv912343	chr19:53594806-53632896	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
14	nsv9748	chr19:53599536-53603017	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv580069	chr19:53599618-53626513	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
16	nsv912344	chr19:53599618-53632896	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
17	nsv963074	chr19:53599665-53601129	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv435700	chr19:53600132-53631014	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:53573600-53604800	Weak transcription	Hela-S3	cervix
2	chr19:53575600-53601000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr19:53576800-53605200	Weak transcription	Stomach Mucosa	stomach
4	chr19:53585400-53604800	Weak transcription	Psoas Muscle	Psoas
5	chr19:53586400-53603400	Strong transcription	Primary T cells from cord blood	blood
6	chr19:53588200-53601200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr19:53588400-53603400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr19:53589200-53604800	Weak transcription	Fetal Brain Male	brain
9	chr19:53589600-53604800	Weak transcription	Small Intestine	intestine
10	chr19:53590400-53605000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr19:53592800-53604800	Weak transcription	HUVEC	blood vessel
12	chr19:53594400-53601000	Weak transcription	Primary B cells from cord blood	blood
13	chr19:53594400-53603400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr19:53594400-53605200	Weak transcription	Fetal Lung	lung
15	chr19:53594600-53600800	Weak transcription	Stomach Smooth Muscle	stomach
16	chr19:53594600-53604800	Weak transcription	Fetal Kidney	kidney
17	chr19:53594600-53604800	Weak transcription	NHEK	skin
18	chr19:53595000-53600800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr19:53595000-53600800	Weak transcription	Colon Smooth Muscle	Colon
20	chr19:53595000-53600800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr19:53595000-53601000	Weak transcription	Aorta	Aorta
22	chr19:53595000-53601000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr19:53595000-53601000	Weak transcription	HMEC	breast
24	chr19:53595200-53600800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr19:53595200-53600800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr19:53595200-53600800	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr19:53595200-53600800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr19:53595200-53600800	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr19:53595200-53600800	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr19:53595200-53600800	Weak transcription	NHDF-Ad	bronchial
31	chr19:53595200-53601000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr19:53595200-53601000	Weak transcription	Gastric	stomach
33	chr19:53595200-53601000	Weak transcription	NHLF	lung
34	chr19:53595200-53601000	Weak transcription	Osteobl	bone
35	chr19:53595200-53601200	Weak transcription	Brain Angular Gyrus	brain
36	chr19:53595200-53601200	Weak transcription	Esophagus	oesophagus
37	chr19:53595200-53602600	Weak transcription	Brain Substantia Nigra	brain
38	chr19:53595200-53603000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr19:53595200-53604000	Weak transcription	Pancreas	Pancrea
40	chr19:53595600-53600800	Weak transcription	Colonic Mucosa	Colon
41	chr19:53596000-53600800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr19:53596600-53603200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr19:53597000-53601600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr19:53597600-53604800	Weak transcription	Primary hematopoietic stem cells	blood
45	chr19:53597800-53600800	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr19:53597800-53600800	Weak transcription	Liver	Liver
47	chr19:53597800-53600800	Weak transcription	Right Atrium	heart
48	chr19:53597800-53601000	Weak transcription	Placenta	Placenta
49	chr19:53597800-53604800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr19:53597800-53604800	Weak transcription	NH-A	brain

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