Variant report

Variant	rs34142892
Chromosome Location	chr19:37054446-37054447
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37053248..37055445-chr19:37061969..37063522,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11882116	0.97[EUR][1000 genomes]
rs12978182	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12979738	0.82[AMR][1000 genomes]
rs12984401	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34141679	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34304873	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs35434557	0.85[EUR][1000 genomes]
rs35659382	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35935605	0.82[AMR][1000 genomes]
rs71356011	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71356016	0.82[AMR][1000 genomes]
rs71356018	0.82[AMR][1000 genomes]
rs7245606	0.85[EUR][1000 genomes]
rs8110468	0.85[EUR][1000 genomes]
rs9676627	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv833817	chr19:36978852-37195695	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
6	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
7	nsv1056134	chr19:37022039-37056943	Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
8	esv3334779	chr19:37050161-37076919	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37021400-37061600	ZNF genes & repeats	Liver	Liver
2	chr19:37022800-37061200	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:37023000-37061800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr19:37023200-37060200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
5	chr19:37023200-37061600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr19:37023400-37060000	ZNF genes & repeats	Fetal Lung	lung
7	chr19:37023400-37062000	ZNF genes & repeats	Fetal Brain Female	brain
8	chr19:37023400-37063000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
9	chr19:37023600-37061000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
10	chr19:37023800-37057800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr19:37023800-37058200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr19:37023800-37058200	ZNF genes & repeats	Dnd41	blood
13	chr19:37023800-37061600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr19:37025600-37061000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
15	chr19:37025600-37062800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr19:37025800-37060200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
17	chr19:37028600-37055000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
18	chr19:37028600-37061800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
19	chr19:37029000-37060000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
20	chr19:37031400-37056800	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
21	chr19:37031400-37057800	ZNF genes & repeats	Primary T cells from cord blood	blood
22	chr19:37034000-37063000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr19:37034200-37059600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
24	chr19:37034800-37057200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
25	chr19:37036200-37059400	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr19:37047000-37058800	Weak transcription	K562	blood
27	chr19:37048400-37062800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr19:37049800-37058000	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
29	chr19:37049800-37061800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
30	chr19:37050000-37055800	ZNF genes & repeats	Fetal Muscle Leg	muscle
31	chr19:37050000-37056000	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
32	chr19:37050200-37055600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr19:37050200-37058200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
34	chr19:37050400-37058000	ZNF genes & repeats	Fetal Intestine Large	intestine
35	chr19:37050400-37062600	Weak transcription	Fetal Heart	heart
36	chr19:37050800-37056200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
37	chr19:37051400-37060800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr19:37051600-37057200	ZNF genes & repeats	Primary B cells from cord blood	blood
39	chr19:37051800-37054600	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
40	chr19:37051800-37058000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr19:37052800-37054800	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr19:37052800-37056600	Weak transcription	HSMM	muscle
43	chr19:37052800-37059600	Weak transcription	HSMMtube	muscle
44	chr19:37052800-37063000	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr19:37052800-37063200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr19:37053400-37060800	Strong transcription	Placenta Amnion	Placenta Amnion
47	chr19:37053400-37063000	Weak transcription	Stomach Mucosa	stomach
48	chr19:37053600-37056600	Weak transcription	NHDF-Ad	bronchial
49	chr19:37053800-37056200	ZNF genes & repeats	Brain Anterior Caudate	brain
50	chr19:37053800-37057400	ZNF genes & repeats	Stomach Smooth Muscle	stomach

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