Variant report

Variant	rs34143236
Chromosome Location	chr11:100690785-100690786
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12272766	1.00[AMR][1000 genomes]
rs57779779	1.00[AMR][1000 genomes]
rs61204670	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530643	chr11:100196082-100713156	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100663000-100691800	Weak transcription	Fetal Muscle Leg	muscle
2	chr11:100670000-100697400	Weak transcription	Placenta	Placenta
3	chr11:100680600-100691800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:100680800-100696400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:100681200-100698000	Weak transcription	Stomach Mucosa	stomach
6	chr11:100681400-100701000	Weak transcription	HSMM	muscle
7	chr11:100684000-100691000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:100684000-100691800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:100685800-100693400	Weak transcription	Primary B cells from cord blood	blood
10	chr11:100686200-100691800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:100686200-100702800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr11:100688000-100693600	Weak transcription	Left Ventricle	heart
13	chr11:100688000-100693600	Weak transcription	Right Atrium	heart
14	chr11:100688000-100698600	Weak transcription	NH-A	brain
15	chr11:100688000-100704000	Weak transcription	Right Ventricle	heart
16	chr11:100689000-100691800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:100689000-100698600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr11:100689200-100691800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr11:100689200-100698200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:100689400-100691800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr11:100689400-100693400	Weak transcription	Psoas Muscle	Psoas
22	chr11:100689400-100694000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr11:100690000-100691200	Enhancers	Fetal Heart	heart
24	chr11:100690400-100696400	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr11:100690600-100692600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links