Variant report

Variant	rs34151234
Chromosome Location	chr12:117452529-117452530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:117447732..117449605-chr12:117449689..117452738,3	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs34570416	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832524	chr12:117314110-117496576	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv519118	chr12:117386085-117521180	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv899541	chr12:117414974-117497066	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117387800-117463600	Weak transcription	HMEC	breast
2	chr12:117393800-117471000	Weak transcription	Small Intestine	intestine
3	chr12:117417400-117453600	Weak transcription	GM12878-XiMat	blood
4	chr12:117426200-117466600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr12:117443800-117461600	Weak transcription	Colonic Mucosa	Colon
6	chr12:117444000-117462800	Weak transcription	K562	blood
7	chr12:117445800-117452600	Weak transcription	Gastric	stomach
8	chr12:117447000-117454200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr12:117447400-117454000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr12:117447400-117454200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr12:117447400-117454800	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr12:117448400-117453000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr12:117448400-117462000	Weak transcription	Hela-S3	cervix
14	chr12:117449800-117452800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr12:117450200-117453200	Weak transcription	NH-A	brain
16	chr12:117450200-117453800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
17	chr12:117450200-117455600	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr12:117450200-117455800	Weak transcription	Fetal Brain Male	brain
19	chr12:117450200-117461800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr12:117450400-117453800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr12:117450400-117454200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr12:117450400-117461800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr12:117450600-117453400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr12:117450800-117452800	Enhancers	HUVEC	blood vessel
25	chr12:117450800-117453400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr12:117450800-117453600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr12:117450800-117453800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr12:117450800-117453800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr12:117450800-117453800	ZNF genes & repeats	Fetal Intestine Small	intestine
30	chr12:117450800-117454800	Strong transcription	Fetal Kidney	kidney
31	chr12:117450800-117461200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr12:117450800-117461600	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr12:117451000-117453600	ZNF genes & repeats	Fetal Muscle Leg	muscle
34	chr12:117451000-117453800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr12:117451000-117454200	Strong transcription	Placenta Amnion	Placenta Amnion
36	chr12:117451000-117455000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr12:117451200-117452600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
38	chr12:117451200-117452600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
39	chr12:117451200-117453400	ZNF genes & repeats	Fetal Brain Female	brain
40	chr12:117451200-117453800	ZNF genes & repeats	Brain Germinal Matrix	brain
41	chr12:117451200-117454200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
42	chr12:117451200-117454800	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr12:117451400-117454200	Strong transcription	NHDF-Ad	bronchial
44	chr12:117451400-117455000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr12:117451600-117452800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
46	chr12:117451600-117454000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr12:117451600-117454200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
48	chr12:117451600-117454400	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr12:117451600-117457000	Strong transcription	Primary T cells from cord blood	blood
50	chr12:117451800-117452600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--

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