Variant report

Variant	rs34152722
Chromosome Location	chr7:140581546-140581547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF4	chr7:140581217-140581610	GM12878	blood:	n/a	n/a
2	BCL11A	chr7:140581364-140581658	GM12878	blood:	n/a	n/a
3	IRF4	chr7:140581224-140581692	GM12878	blood:	n/a	n/a
4	BATF	chr7:140581246-140581721	GM12878	blood:	n/a	n/a
5	EP300	chr7:140581382-140581589	GM12878	blood:	n/a	n/a
6	MXI1	chr7:140581340-140581693	GM12878	blood:	n/a	n/a
7	BCL11A	chr7:140581398-140581599	GM12878	blood:	n/a	n/a
8	EP300	chr7:140581316-140581752	GM12878	blood:	n/a	n/a
9	RUNX3	chr7:140581274-140581657	GM12878	blood:	n/a	n/a
10	EP300	chr7:140581407-140581645	GM12878	blood:	n/a	n/a
11	USF2	chr7:140581337-140581641	GM12878	blood:	n/a	n/a
12	BHLHE40	chr7:140581379-140581795	GM12878	blood:	n/a	n/a
13	ATF2	chr7:140581221-140581671	GM12878	blood:	n/a	n/a
14	BATF	chr7:140581255-140581651	GM12878	blood:	n/a	n/a
15	EBF1	chr7:140581340-140581629	GM12878	blood:	n/a	n/a
16	CTCF	chr7:140581512-140581780	GM12878	blood:	n/a	n/a
17	TBL1XR1	chr7:140581347-140581598	GM12878	blood:	n/a	n/a
18	MAX	chr7:140581399-140581620	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000271932	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs35020037	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351231	chr7:140390303-140588539	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv831158	chr7:140392222-140602315	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv518139	chr7:140512661-140622355	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1029363	chr7:140567136-140594073	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140547200-140582400	Weak transcription	Fetal Stomach	stomach
2	chr7:140549000-140594400	Weak transcription	Fetal Thymus	thymus
3	chr7:140563600-140586000	Weak transcription	K562	blood
4	chr7:140568000-140586000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr7:140570600-140606000	Weak transcription	Fetal Intestine Small	intestine
6	chr7:140570800-140583000	Weak transcription	Primary B cells from cord blood	blood
7	chr7:140570800-140584200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr7:140573600-140587800	Weak transcription	Left Ventricle	heart
9	chr7:140573800-140581600	Weak transcription	Fetal Heart	heart
10	chr7:140576600-140585600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr7:140577000-140586800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr7:140577000-140591000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr7:140577400-140585600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr7:140577600-140586400	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr7:140577600-140589600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr7:140577600-140598600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr7:140578600-140585600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr7:140578800-140586200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr7:140580000-140584000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr7:140580200-140581800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr7:140580400-140603200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr7:140580800-140581600	Enhancers	Primary T cells from cord blood	blood
23	chr7:140581000-140581600	Flanking Active TSS	GM12878-XiMat	blood
24	chr7:140581200-140581600	Enhancers	Brain Angular Gyrus	brain
25	chr7:140581200-140581800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr7:140581200-140581800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr7:140581200-140581800	Enhancers	Brain Anterior Caudate	brain
28	chr7:140581200-140581800	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr7:140581200-140581800	Enhancers	Pancreas	Pancrea
30	chr7:140581400-140582000	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr7:140581400-140585600	Weak transcription	Brain Hippocampus Middle	brain
32	chr7:140581400-140587400	Weak transcription	Lung	lung

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