Variant report

Variant	rs34154140
Chromosome Location	chr4:10686701-10686702
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:10686033-10686805	GM12892	blood:	n/a	n/a
2	POLR2A	chr4:10686138-10686785	GM15510	blood:	n/a	n/a
3	POLR2A	chr4:10685527-10686857	GM12892	blood:	n/a	n/a
4	POLR2A	chr4:10686061-10686773	GM12891	blood:	n/a	n/a
5	PML	chr4:10686047-10686809	GM12878	blood:	n/a	n/a
6	SPI1	chr4:10686240-10686745	GM12891	blood:	n/a	chr4:10686525-10686534 chr4:10686526-10686533 chr4:10686523-10686536 chr4:10686524-10686537
7	POLR2A	chr4:10684654-10686878	GM12892	blood:	n/a	n/a
8	POLR2A	chr4:10686159-10686738	GM19193	blood:	n/a	n/a
9	POLR2A	chr4:10684786-10686803	GM12878	blood:	n/a	n/a
10	NFIC	chr4:10686166-10686710	GM12878	blood:	n/a	n/a
11	RUNX3	chr4:10686198-10686733	GM12878	blood:	n/a	n/a
12	RUNX3	chr4:10686202-10686707	GM12878	blood:	n/a	n/a
13	NFYB	chr4:10686294-10686720	GM12878	blood:	n/a	n/a
14	SPI1	chr4:10686279-10686757	GM12891	blood:	n/a	chr4:10686525-10686534 chr4:10686526-10686533 chr4:10686523-10686536 chr4:10686524-10686537
15	SPI1	chr4:10686292-10686794	HL-60	blood:	n/a	chr4:10686525-10686534 chr4:10686526-10686533 chr4:10686523-10686536 chr4:10686524-10686537
16	ATF2	chr4:10686178-10686735	GM12878	blood:	n/a	n/a
17	SPI1	chr4:10686317-10686785	GM12878	blood:	n/a	chr4:10686525-10686534 chr4:10686526-10686533 chr4:10686523-10686536 chr4:10686524-10686537
18	MTA3	chr4:10686087-10686837	GM12878	blood:	n/a	n/a
19	MXI1	chr4:10685956-10686772	GM12878	blood:	n/a	n/a
20	POLR2A	chr4:10684840-10686782	GM18951	blood:	n/a	n/a
21	POLR2A	chr4:10684759-10686860	GM19099	blood:	n/a	n/a
22	POLR2A	chr4:10686000-10686828	GM12878	blood:	n/a	n/a
23	POLR2A	chr4:10685497-10686805	GM18526	blood:	n/a	n/a
24	POLR2A	chr4:10684706-10686868	GM12891	blood:	n/a	n/a
25	POLR2A	chr4:10685952-10686747	GM12878	blood:	n/a	n/a
26	POLR2A	chr4:10686129-10686726	GM12891	blood:	n/a	n/a
27	YY1	chr4:10686334-10686704	GM12878	blood:	n/a	n/a
28	MAX	chr4:10686361-10686891	GM12878	blood:	n/a	n/a
29	EP300	chr4:10686237-10686895	GM12878	blood:	n/a	chr4:10686525-10686534
30	POLR2A	chr4:10685658-10686878	GM12892	blood:	n/a	n/a
31	WRNIP1	chr4:10686248-10686791	GM12878	blood:	n/a	n/a
32	POLR2A	chr4:10684761-10686827	GM12892	blood:	n/a	n/a
33	SPI1	chr4:10686215-10686878	HL-60	blood:	n/a	chr4:10686525-10686534 chr4:10686526-10686533 chr4:10686523-10686536 chr4:10686524-10686537
34	MAZ	chr4:10686165-10686802	GM12878	blood:	n/a	n/a
35	MTA3	chr4:10686103-10686776	GM12878	blood:	n/a	n/a
36	SPI1	chr4:10686176-10686833	GM12878	blood:	n/a	chr4:10686525-10686534 chr4:10686526-10686533 chr4:10686523-10686536 chr4:10686524-10686537
37	TBP	chr4:10686147-10686769	GM12878	blood:	n/a	n/a
38	ELF1	chr4:10686239-10686718	GM12878	blood:	n/a	chr4:10686525-10686536
39	BCLAF1	chr4:10686081-10686796	GM12878	blood:	n/a	n/a
40	BCLAF1	chr4:10686198-10686760	GM12878	blood:	n/a	n/a
41	ATF2	chr4:10686127-10686722	GM12878	blood:	n/a	n/a
42	YY1	chr4:10686362-10686848	GM12878	blood:	n/a	n/a
43	RELA	chr4:10685952-10686792	GM18951	blood:	n/a	n/a

Variant related genes	Relation type
CLNK	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs61794270	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs61794271	0.84[ASN][1000 genomes]
rs61794272	0.88[ASN][1000 genomes]
rs61794274	0.88[ASN][1000 genomes]
rs61794275	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs61794276	0.88[ASN][1000 genomes]
rs61794277	0.96[ASN][1000 genomes]
rs61796844	0.93[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs61796845	0.93[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6813206	0.93[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6830367	0.93[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs73216726	0.93[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs73216739	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73216749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73216755	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73216759	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73216761	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003454	chr4:9805223-10710990	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
2	nsv537023	chr4:9805223-10710990	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
3	nsv931483	chr4:9814721-10716463	Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
4	nsv1009972	chr4:9903566-10710990	Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
5	nsv537027	chr4:9903566-10710990	Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
6	nsv530280	chr4:9947818-10940041	Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
7	nsv869057	chr4:10013411-10875454	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
8	nsv997936	chr4:10040713-11009045	Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
9	nsv593727	chr4:10397327-10694991	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
10	nsv517971	chr4:10399068-10893253	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	nsv878694	chr4:10407572-10783606	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
12	nsv878697	chr4:10501373-10831866	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
13	nsv829860	chr4:10598743-10764854	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:10683600-10691600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:10685000-10686800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
3	chr4:10685000-10688200	Enhancers	Primary hematopoietic stem cells	blood
4	chr4:10685800-10686800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:10686000-10686800	Flanking Active TSS	Primary B cells from cord blood	blood
6	chr4:10686000-10687000	Flanking Active TSS	GM12878-XiMat	blood
7	chr4:10686200-10686800	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr4:10686200-10686800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:10686600-10686800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr4:10686600-10686800	Enhancers	Spleen	Spleen
11	chr4:10686600-10687600	Weak transcription	Fetal Thymus	thymus
12	chr4:10686600-10690600	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr4:10686600-10690800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr4:10686600-10692800	Enhancers	Primary B cells from peripheral blood	blood

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