Variant report

Variant	rs34158870
Chromosome Location	chr3:24284118-24284119
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1449872	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv876626	chr3:24281488-24327131	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24268200-24291000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:24272400-24301400	Weak transcription	Fetal Intestine Large	intestine
3	chr3:24276600-24286200	Weak transcription	Liver	Liver
4	chr3:24277200-24286200	Weak transcription	HepG2	liver
5	chr3:24279600-24291400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr3:24282200-24284800	Enhancers	Psoas Muscle	Psoas
7	chr3:24282400-24285600	Strong transcription	Fetal Intestine Small	intestine
8	chr3:24282600-24285600	Enhancers	Brain Germinal Matrix	brain
9	chr3:24282800-24284400	Enhancers	Right Ventricle	heart
10	chr3:24282800-24284600	Enhancers	Esophagus	oesophagus
11	chr3:24282800-24284600	Enhancers	Fetal Muscle Leg	muscle
12	chr3:24282800-24285200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr3:24282800-24285200	Enhancers	NHDF-Ad	bronchial
14	chr3:24282800-24285400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr3:24282800-24285400	Enhancers	Adipose Nuclei	Adipose
16	chr3:24283000-24284200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr3:24283000-24284400	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr3:24283000-24284400	Enhancers	Brain Cingulate Gyrus	brain
19	chr3:24283000-24284400	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr3:24283000-24284600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr3:24283000-24284600	Enhancers	HUVEC	blood vessel
22	chr3:24283000-24285000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:24283000-24285000	Enhancers	HMEC	breast
24	chr3:24283000-24285200	Enhancers	Fetal Brain Male	brain
25	chr3:24283000-24285400	Enhancers	Colon Smooth Muscle	Colon
26	chr3:24283200-24284200	Enhancers	Fetal Brain Female	brain
27	chr3:24283200-24284200	Weak transcription	Placenta	Placenta
28	chr3:24283200-24284200	Weak transcription	Lung	lung
29	chr3:24283200-24284400	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr3:24283200-24284400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr3:24283200-24284400	Enhancers	Brain Angular Gyrus	brain
32	chr3:24283200-24284400	Enhancers	Fetal Stomach	stomach
33	chr3:24283200-24284400	Enhancers	Stomach Mucosa	stomach
34	chr3:24283200-24284400	Enhancers	Osteobl	bone
35	chr3:24283200-24284600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr3:24283200-24284600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr3:24283200-24284600	Enhancers	Rectal Smooth Muscle	rectum
38	chr3:24283200-24284800	Enhancers	NHEK	skin
39	chr3:24283200-24285200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr3:24283200-24285200	Enhancers	Left Ventricle	heart
41	chr3:24283400-24284200	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr3:24283400-24284200	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr3:24283400-24284200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
44	chr3:24283400-24284400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr3:24283400-24284400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr3:24283400-24284400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr3:24283400-24284400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr3:24283400-24284400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr3:24283400-24284400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr3:24283400-24284400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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