Variant report

Variant	rs34159107
Chromosome Location	chr9:2640894-2640895
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:2621566..2623636-chr9:2638581..2641950,3	MCF-7	breast:
2	chr9:2620987..2624573-chr9:2639977..2643677,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147852	Chromatin interaction
ENSG00000236404	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28439743	1.00[AMR][1000 genomes]
rs35466361	1.00[AMR][1000 genomes]
rs35486699	1.00[AMR][1000 genomes]
rs7871038	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020530	chr9:1870197-2658587	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530929	chr9:1998911-2925112	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv529508	chr9:2267812-2684272	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv916750	chr9:2430846-2826706	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv531564	chr9:2452325-2700375	Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv1017581	chr9:2494815-3172020	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv539934	chr9:2494815-3172020	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:2623800-2641000	Weak transcription	Esophagus	oesophagus
2	chr9:2624200-2641000	Weak transcription	Aorta	Aorta
3	chr9:2624400-2641200	Weak transcription	Fetal Kidney	kidney
4	chr9:2624400-2643000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr9:2624400-2643200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:2625000-2641000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:2627200-2648400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr9:2630600-2641000	Weak transcription	Gastric	stomach
9	chr9:2630600-2641200	Weak transcription	Lung	lung
10	chr9:2633200-2643200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:2633200-2646000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr9:2633600-2656600	Weak transcription	Colon Smooth Muscle	Colon
13	chr9:2634000-2643000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr9:2634000-2645000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr9:2634200-2645400	Weak transcription	HSMMtube	muscle
16	chr9:2634400-2641000	Weak transcription	Right Ventricle	heart
17	chr9:2634400-2648200	Weak transcription	Placenta	Placenta
18	chr9:2634600-2643200	Weak transcription	NHLF	lung
19	chr9:2634800-2643400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr9:2635000-2643200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr9:2635000-2652600	Strong transcription	Dnd41	blood
22	chr9:2635200-2641000	Weak transcription	Fetal Stomach	stomach
23	chr9:2635200-2641400	Weak transcription	Fetal Heart	heart
24	chr9:2635200-2655000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr9:2635200-2656200	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr9:2635400-2643200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr9:2635400-2656000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:2635400-2656800	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr9:2635400-2656800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
30	chr9:2635600-2647600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr9:2635600-2655000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr9:2635800-2656000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr9:2635800-2657800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr9:2636800-2641000	Weak transcription	Brain Hippocampus Middle	brain
35	chr9:2636800-2643200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr9:2637000-2642800	Weak transcription	HMEC	breast
37	chr9:2637200-2641400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr9:2637200-2643200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr9:2637400-2654400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr9:2637600-2643200	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr9:2637800-2643000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr9:2638000-2654400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr9:2638000-2656400	Strong transcription	Fetal Muscle Trunk	muscle
44	chr9:2638400-2655800	Strong transcription	Fetal Lung	lung
45	chr9:2638400-2656400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr9:2638600-2653600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
47	chr9:2638600-2655400	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr9:2638600-2655800	Strong transcription	Stomach Smooth Muscle	stomach
49	chr9:2638800-2656000	Strong transcription	Fetal Muscle Leg	muscle
50	chr9:2639000-2650800	Weak transcription	HSMM	muscle

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