Variant report

Variant	rs34162858
Chromosome Location	chr4:57709654-57709655
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13121750	1.00[AFR][1000 genomes]
rs13138730	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs34986806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35084431	1.00[AFR][1000 genomes]
rs35529818	1.00[AFR][1000 genomes]
rs35770480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71601650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71601652	0.96[EUR][1000 genomes]
rs71601657	1.00[AFR][1000 genomes]
rs71601658	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv1012287	chr4:57652778-57853485	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1012125	chr4:57668229-57865803	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57709400-57709800	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:57709400-57709800	Enhancers	Lung	lung
3	chr4:57709400-57710000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
4	chr4:57709400-57710000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:57709400-57710000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:57709400-57710000	Enhancers	Fetal Muscle Leg	muscle
7	chr4:57709400-57710200	Enhancers	Ovary	ovary
8	chr4:57709600-57709800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
9	chr4:57709600-57709800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
10	chr4:57709600-57709800	Enhancers	Colonic Mucosa	Colon
11	chr4:57709600-57709800	Enhancers	Right Atrium	heart
12	chr4:57709600-57710000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr4:57709600-57710000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
14	chr4:57709600-57710000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
15	chr4:57709600-57710000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
16	chr4:57709600-57710000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr4:57709600-57710000	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr4:57709600-57710000	Enhancers	Adipose Nuclei	Adipose
19	chr4:57709600-57710000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr4:57709600-57710000	Enhancers	Fetal Lung	lung
21	chr4:57709600-57710000	Enhancers	Gastric	stomach
22	chr4:57709600-57710000	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr4:57709600-57710000	Enhancers	HMEC	breast
24	chr4:57709600-57710200	Enhancers	Pancreas	Pancrea
25	chr4:57709600-57710800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell

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