Variant report

Variant	rs34169052
Chromosome Location	chr3:136468000-136468001
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:17)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:17 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBL1XR1	chr3:136467770-136468074	K562	blood:	n/a	n/a
2	MAFK	chr3:136467767-136468128	K562	blood:	n/a	n/a
3	JUND	chr3:136467917-136468205	K562	blood:	n/a	n/a
4	POLR2A	chr3:136467987-136468279	K562	blood:	n/a	n/a
5	WRNIP1	chr3:136467722-136468261	GM12878	blood:	n/a	n/a
6	TBL1XR1	chr3:136467904-136468029	GM12878	blood:	n/a	n/a
7	MYC	chr3:136467832-136468228	K562	blood:	n/a	n/a
8	ELF1	chr3:136467936-136468289	K562	blood:	n/a	n/a
9	NR2F2	chr3:136467693-136468325	K562	blood:	n/a	n/a
10	MAZ	chr3:136467821-136468166	K562	blood:	n/a	n/a
11	UBTF	chr3:136467970-136468214	K562	blood:	n/a	n/a
12	ARID3A	chr3:136467850-136468195	K562	blood:	n/a	n/a
13	ZMIZ1	chr3:136467864-136468163	K562	blood:	n/a	n/a
14	IRF1	chr3:136467682-136468209	K562	blood:	n/a	n/a
15	ZNF384	chr3:136467785-136468805	K562	blood:	n/a	n/a
16	MYC	chr3:136467858-136468290	K562	blood:	n/a	n/a
17	EP300	chr3:136467725-136468212	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:136466613..136474326-chr3:136579481..136583133,10	K562	blood:
2	chr3:136208388..136211090-chr3:136467197..136470066,2	K562	blood:
3	chr3:136261604..136263396-chr3:136467886..136469461,2	K562	blood:
4	chr3:136389263..136391478-chr3:136467252..136469430,2	K562	blood:
5	chr3:136444891..136447189-chr3:136467226..136469420,2	K562	blood:
6	chr3:136275233..136277480-chr3:136465524..136468247,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000261758	TF binding region
ENSG00000158092	Chromatin interaction
ENSG00000239213	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13063893	1.00[AFR][1000 genomes]
rs13072691	1.00[AFR][1000 genomes]
rs13075615	1.00[AFR][1000 genomes]
rs34281413	1.00[AFR][1000 genomes]
rs34613715	1.00[AFR][1000 genomes]
rs34738913	1.00[AFR][1000 genomes]
rs35849216	1.00[AFR][1000 genomes]
rs4678440	1.00[AFR][1000 genomes]
rs71336078	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877529	chr3:136364511-136487559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1006737	chr3:136466188-136530743	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:144 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136432400-136468200	Weak transcription	Aorta	Aorta
2	chr3:136449000-136470000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:136450800-136469000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr3:136454200-136469200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:136454200-136470000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:136454400-136469200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr3:136454800-136469200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr3:136456400-136468000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:136457400-136470000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr3:136458400-136470000	Weak transcription	Esophagus	oesophagus
11	chr3:136460400-136468000	Weak transcription	Gastric	stomach
12	chr3:136462800-136468000	Weak transcription	NHLF	lung
13	chr3:136463400-136468200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr3:136463800-136468800	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr3:136464000-136468600	Enhancers	Primary hematopoietic stem cells	blood
16	chr3:136464400-136469000	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr3:136464600-136468000	Weak transcription	Fetal Stomach	stomach
18	chr3:136464600-136468000	Weak transcription	Pancreas	Pancrea
19	chr3:136464600-136468000	Weak transcription	Right Atrium	heart
20	chr3:136464600-136468000	Enhancers	Dnd41	blood
21	chr3:136465200-136468000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:136465600-136468000	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr3:136465600-136468000	Weak transcription	HUVEC	blood vessel
24	chr3:136465800-136470000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr3:136466000-136468600	Enhancers	Spleen	Spleen
26	chr3:136466400-136468000	Weak transcription	Primary B cells from peripheral blood	blood
27	chr3:136466400-136468000	Weak transcription	Brain Substantia Nigra	brain
28	chr3:136466400-136468200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr3:136466400-136468200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr3:136466600-136468000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr3:136466600-136468000	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr3:136466600-136469200	Weak transcription	Placenta	Placenta
33	chr3:136467000-136468600	Enhancers	Lung	lung
34	chr3:136467000-136469000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr3:136467200-136468800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr3:136467200-136469000	Enhancers	Primary T cells fromperipheralblood	blood
37	chr3:136467400-136469000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
38	chr3:136467400-136469000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr3:136467400-136469000	Enhancers	Right Ventricle	heart
40	chr3:136467400-136469200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr3:136467600-136468000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr3:136467600-136468000	Genic enhancers	Hela-S3	cervix
43	chr3:136467600-136468200	Enhancers	Stomach Smooth Muscle	stomach
44	chr3:136467600-136468200	Enhancers	HSMM	muscle
45	chr3:136467600-136468400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr3:136467600-136468400	Enhancers	Stomach Mucosa	stomach
47	chr3:136467600-136468400	Flanking Active TSS	GM12878-XiMat	blood
48	chr3:136467600-136468400	Flanking Active TSS	K562	blood
49	chr3:136467600-136468600	Enhancers	Osteobl	bone
50	chr3:136467600-136468800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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