Variant report
| Variant | rs34174508 |
|---|---|
| Chromosome Location | chr7:50941745-50941746 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10481008 | 0.81[EUR][1000 genomes] |
| rs10486747 | 0.85[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11238407 | 0.81[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11526296 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11531636 | 0.83[EUR][1000 genomes] |
| rs11765438 | 0.81[EUR][1000 genomes] |
| rs11973328 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11980778 | 0.85[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11982677 | 0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12113554 | 0.82[EUR][1000 genomes] |
| rs12531763 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12533749 | 0.89[ASN][1000 genomes] |
| rs12718995 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs13232494 | 0.81[EUR][1000 genomes] |
| rs17725609 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2018824 | 0.81[EUR][1000 genomes] |
| rs34522932 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs34996868 | 0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4947968 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60617249 | 0.81[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs61471556 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6968511 | 0.85[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7794123 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9642409 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs985339 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016665 | chr7:50452552-51404524 | Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv606907 | chr7:50899168-51195380 | Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv524131 | chr7:50933370-50961303 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv527462 | chr7:50933370-50989383 | Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv888022 | chr7:50933678-51046674 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:50937600-50942600 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
| 2 | chr7:50940600-50942000 | ZNF genes & repeats | iPS-20b Cell Line | embryonic stem cell |
