Variant report

Variant	rs34181857
Chromosome Location	chr7:50359194-50359195
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:50353400..50357230-chr7:50357507..50360612,6	K562	blood:
2	chr19:809971..813170-chr7:50356560..50359561,3	K562	blood:
3	chr7:50358381..50361158-chr7:50422045..50423790,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs12718258	0.81[EUR][1000 genomes]
rs12718259	0.81[EUR][1000 genomes]
rs12718262	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12718263	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13223971	0.81[EUR][1000 genomes]
rs13225200	0.81[EUR][1000 genomes]
rs13238273	0.81[EUR][1000 genomes]
rs34175022	0.81[EUR][1000 genomes]
rs34243680	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34258132	0.81[EUR][1000 genomes]
rs34311116	0.81[EUR][1000 genomes]
rs34484271	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34856226	0.81[EUR][1000 genomes]
rs34861102	0.81[EUR][1000 genomes]
rs34919759	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34920847	0.81[EUR][1000 genomes]
rs34936043	0.81[EUR][1000 genomes]
rs34967960	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34971464	0.81[EUR][1000 genomes]
rs35019961	0.81[EUR][1000 genomes]
rs35042793	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35048559	0.81[EUR][1000 genomes]
rs35064086	0.81[EUR][1000 genomes]
rs35295940	0.81[EUR][1000 genomes]
rs35420653	0.81[EUR][1000 genomes]
rs35456567	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35487792	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35661691	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35803603	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35928979	0.95[EUR][1000 genomes]
rs35946624	0.85[EUR][1000 genomes]
rs35985210	0.81[EUR][1000 genomes]
rs36039109	0.81[EUR][1000 genomes]
rs6955602	0.81[EUR][1000 genomes]
rs6962406	0.81[EUR][1000 genomes]
rs6963347	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6963656	0.81[EUR][1000 genomes]
rs6965399	0.81[EUR][1000 genomes]
rs6979359	0.81[EUR][1000 genomes]
rs71538375	0.81[EUR][1000 genomes]
rs71538376	0.81[EUR][1000 genomes]
rs71538377	0.81[EUR][1000 genomes]
rs71538378	0.81[EUR][1000 genomes]
rs71538384	0.85[EUR][1000 genomes]
rs71538385	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7781824	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7811173	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464444	chr7:49671882-50454736	Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv606897	chr7:49671883-50454736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv498090	chr7:49708644-50427714	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1020869	chr7:49712860-50457544	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1024102	chr7:50195864-50418159	Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50355000-50367200	Weak transcription	Spleen	Spleen
2	chr7:50356200-50360800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:50356200-50367200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:50356400-50360200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:50356400-50360200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:50356400-50360800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:50356400-50361600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr7:50356400-50364000	Genic enhancers	Fetal Thymus	thymus
9	chr7:50356400-50367200	Weak transcription	Lung	lung
10	chr7:50357200-50359200	Strong transcription	Dnd41	blood
11	chr7:50357200-50359800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
12	chr7:50357800-50369400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr7:50358000-50359200	Genic enhancers	Primary B cells from cord blood	blood
14	chr7:50358000-50359800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr7:50358400-50359800	Genic enhancers	Primary hematopoietic stem cells	blood
16	chr7:50358400-50360800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr7:50358400-50360800	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
18	chr7:50358400-50361600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr7:50358400-50362400	Genic enhancers	Primary B cells from peripheral blood	blood
20	chr7:50358400-50369400	Strong transcription	K562	blood
21	chr7:50358400-50369600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr7:50358600-50360400	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr7:50358600-50360800	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
24	chr7:50358600-50362400	Genic enhancers	Primary monocytes fromperipheralblood	blood
25	chr7:50358800-50359600	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr7:50358800-50361000	Genic enhancers	Primary T cells fromperipheralblood	blood
27	chr7:50358800-50361200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr7:50358800-50364000	Genic enhancers	GM12878-XiMat	blood
29	chr7:50359000-50359200	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr7:50359000-50359600	Genic enhancers	Primary neutrophils fromperipheralblood	blood
31	chr7:50359000-50359600	Transcr. at gene 5' and 3'	Primary T cells from cord blood	blood
32	chr7:50359000-50359600	Transcr. at gene 5' and 3'	Primary T helper naive cells from peripheral blood	blood
33	chr7:50359000-50359600	Transcr. at gene 5' and 3'	Primary T killer memory cells from peripheral blood	blood
34	chr7:50359000-50359800	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
35	chr7:50359000-50360400	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr7:50359000-50360600	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
37	chr7:50359000-50360600	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr7:50359000-50360600	Genic enhancers	Thymus	Thymus
39	chr7:50359000-50360800	Genic enhancers	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links