Variant report

Variant	rs34184688
Chromosome Location	chr7:12299794-12299795
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:12297657..12300131-chr7:12305646..12308026,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10253377	0.87[EUR][1000 genomes]
rs1047601	1.00[ASN][1000 genomes]
rs11977828	0.87[EUR][1000 genomes]
rs12699342	0.86[EUR][1000 genomes]
rs13228820	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17670901	1.00[ASN][1000 genomes]
rs17671056	1.00[ASN][1000 genomes]
rs2883842	0.96[EUR][1000 genomes]
rs3887296	1.00[ASN][1000 genomes]
rs4330594	1.00[ASN][1000 genomes]
rs4721078	1.00[ASN][1000 genomes]
rs4721079	1.00[ASN][1000 genomes]
rs4721080	1.00[ASN][1000 genomes]
rs4721082	1.00[ASN][1000 genomes]
rs4721088	1.00[ASN][1000 genomes]
rs59410610	1.00[ASN][1000 genomes]
rs62448708	1.00[ASN][1000 genomes]
rs62448726	1.00[ASN][1000 genomes]
rs62448727	1.00[ASN][1000 genomes]
rs62448730	1.00[ASN][1000 genomes]
rs62448731	1.00[ASN][1000 genomes]
rs62448733	1.00[ASN][1000 genomes]
rs62451461	1.00[ASN][1000 genomes]
rs62451464	1.00[ASN][1000 genomes]
rs62451465	1.00[ASN][1000 genomes]
rs62451486	1.00[ASN][1000 genomes]
rs62451487	1.00[ASN][1000 genomes]
rs6942432	1.00[ASN][1000 genomes]
rs6942551	1.00[ASN][1000 genomes]
rs6945587	1.00[ASN][1000 genomes]
rs6948515	0.83[EUR][1000 genomes]
rs6949562	0.87[EUR][1000 genomes]
rs6969447	0.82[EUR][1000 genomes]
rs6976341	0.84[EUR][1000 genomes]
rs73053536	1.00[ASN][1000 genomes]
rs73055515	1.00[ASN][1000 genomes]
rs73055517	1.00[ASN][1000 genomes]
rs73290446	1.00[ASN][1000 genomes]
rs73299043	1.00[ASN][1000 genomes]
rs73301032	1.00[ASN][1000 genomes]
rs73677559	1.00[ASN][1000 genomes]
rs73677570	1.00[ASN][1000 genomes]
rs73677573	1.00[ASN][1000 genomes]
rs73677575	1.00[ASN][1000 genomes]
rs73677576	1.00[ASN][1000 genomes]
rs7776877	0.83[EUR][1000 genomes]
rs7795892	0.82[EUR][1000 genomes]
rs7804805	1.00[ASN][1000 genomes]
rs7808819	1.00[ASN][1000 genomes]
rs7808979	0.84[EUR][1000 genomes]
rs7811882	1.00[ASN][1000 genomes]
rs7812040	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv534432	chr7:12148960-12693032	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1024554	chr7:12214722-12967418	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv538735	chr7:12214722-12967418	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
5	nsv1033704	chr7:12286225-12355773	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12297800-12299800	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr7:12298200-12300400	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr7:12299000-12301600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links