Variant report

Variant	rs34187058
Chromosome Location	chr10:97063487-97063488
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:97054091..97056343-chr10:97062077..97064550,2	K562	blood:
2	chr10:97058437..97060123-chr10:97062143..97063800,2	K562	blood:
3	chr10:97047645..97051954-chr10:97061072..97065962,7	MCF-7	breast:
4	chr10:97063353..97065156-chr10:97068953..97071321,2	MCF-7	breast:
5	chr10:97063446..97065363-chr10:97067014..97069636,2	K562	blood:
6	chr10:97049641..97053849-chr10:97062543..97067097,4	K562	blood:
7	chr10:97049641..97052402-chr10:97061641..97064043,3	K562	blood:
8	chr10:97063446..97065566-chr10:97068136..97069871,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12766965	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12778481	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12779007	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12784371	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35213500	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35598837	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs45546031	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7099702	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71505737	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv552021	chr10:97053404-97071334	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3407243	chr10:97061412-97063885	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97055600-97072800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:97055800-97063800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:97055800-97067600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:97057600-97064000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:97057600-97070200	Weak transcription	Spleen	Spleen
6	chr10:97057800-97064600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:97058000-97068200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr10:97058200-97067600	Weak transcription	GM12878-XiMat	blood
9	chr10:97062800-97066400	Enhancers	Fetal Heart	heart
10	chr10:97063000-97065200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr10:97063200-97063600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:97063200-97063600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:97063200-97063600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:97063200-97063600	Enhancers	Lung	lung
15	chr10:97063200-97063600	Enhancers	Pancreas	Pancrea
16	chr10:97063200-97064000	Flanking Active TSS	K562	blood
17	chr10:97063200-97064000	Enhancers	NH-A	brain
18	chr10:97063200-97064200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr10:97063200-97064200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr10:97063200-97064400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr10:97063200-97064800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:97063200-97064800	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr10:97063200-97064800	Enhancers	Left Ventricle	heart
24	chr10:97063200-97065400	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr10:97063400-97064000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
26	chr10:97063400-97064000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
27	chr10:97063400-97064000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr10:97063400-97064000	Enhancers	Right Atrium	heart
29	chr10:97063400-97064000	Enhancers	HMEC	breast
30	chr10:97063400-97064000	Enhancers	NHEK	skin
31	chr10:97063400-97064600	Enhancers	Fetal Intestine Small	intestine
32	chr10:97063400-97064800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr10:97063400-97064800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr10:97063400-97064800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr10:97063400-97064800	Enhancers	Gastric	stomach
36	chr10:97063400-97066000	Enhancers	Rectal Mucosa Donor 31	rectum
37	chr10:97063400-97067600	Enhancers	A549	lung
38	chr10:97063400-97072400	Weak transcription	Fetal Brain Female	brain
39	chr10:97063400-97073600	Weak transcription	Brain Inferior Temporal Lobe	brain

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