Variant report

Variant	rs34198027
Chromosome Location	chr5:80570411-80570412
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ACOT12-6	chr5:80569140-80570930	ucscGeneNc_uc003khg_1

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13159978	0.88[AMR][1000 genomes]
rs13160378	0.96[ASN][1000 genomes]
rs13184427	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13187211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16878563	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16878572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2270825	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2291940	0.87[EUR][1000 genomes]
rs2406555	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34378267	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34755999	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35244045	0.96[ASN][1000 genomes]
rs35646117	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35813740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35864788	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6859306	0.88[AMR][1000 genomes]
rs6872504	0.88[AMR][1000 genomes]
rs6899067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7725743	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs976741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv598750	chr5:80503528-80599578	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80554600-80576400	Weak transcription	Pancreas	Pancrea
2	chr5:80565200-80580400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:80566000-80572600	Weak transcription	Hela-S3	cervix
4	chr5:80566200-80574400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:80566200-80587800	Weak transcription	Ovary	ovary
6	chr5:80566400-80571200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:80566400-80572600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:80566400-80575400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:80566400-80581400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr5:80566400-80587600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:80566800-80587600	Weak transcription	Right Ventricle	heart
12	chr5:80568000-80585600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr5:80570400-80571800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:80570400-80587200	Weak transcription	Primary B cells from cord blood	blood

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