Variant report

Variant	rs34206618
Chromosome Location	chr15:59843558-59843559
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59842796..59844336-chr15:59845616..59847879,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11633493	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12442882	1.00[AFR][1000 genomes]
rs12908797	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12913497	0.90[EUR][1000 genomes]
rs34056506	1.00[AFR][1000 genomes]
rs34140704	1.00[AFR][1000 genomes]
rs34805018	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35195175	1.00[AFR][1000 genomes]
rs35478253	0.90[EUR][1000 genomes]
rs35631395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4609784	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1044442	chr15:59765724-59955587	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv542403	chr15:59765724-59955587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59835400-59844200	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr15:59836400-59845400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:59839000-59847600	Weak transcription	Small Intestine	intestine
4	chr15:59841000-59843600	Enhancers	Stomach Mucosa	stomach
5	chr15:59841000-59843800	Enhancers	Fetal Intestine Large	intestine
6	chr15:59841000-59844400	Enhancers	Fetal Intestine Small	intestine
7	chr15:59841400-59848200	Enhancers	HepG2	liver
8	chr15:59841600-59861600	Weak transcription	Gastric	stomach
9	chr15:59842200-59843600	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr15:59842200-59843800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr15:59842200-59843800	Enhancers	A549	lung
12	chr15:59842800-59843600	Flanking Active TSS	Hela-S3	cervix
13	chr15:59842800-59843600	Enhancers	HUVEC	blood vessel
14	chr15:59843000-59843600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr15:59843000-59844000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr15:59843200-59843600	Enhancers	H1 Cell Line	embryonic stem cell
17	chr15:59843200-59843600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
18	chr15:59843200-59843600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr15:59843200-59843800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr15:59843200-59843800	Enhancers	Duodenum Mucosa	Duodenum
21	chr15:59843200-59843800	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr15:59843400-59843600	Enhancers	H9 Cell Line	embryonic stem cell
23	chr15:59843400-59843600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
24	chr15:59843400-59843600	Active TSS	Colonic Mucosa	Colon
25	chr15:59843400-59843800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links