The 2.0 version of rSNPBase

Variant report

Variant rs34218330
Chromosome Location chr2:85940774-85940775
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:85926000-85945200 Enhancers Primary monocytes fromperipheralblood blood
2 chr2:85931200-85941600 Enhancers Liver Liver
3 chr2:85931600-85941000 Enhancers Primary hematopoietic stem cells blood
4 chr2:85932400-85941400 Enhancers Brain Hippocampus Middle brain
5 chr2:85932800-85946600 Weak transcription Colon Smooth Muscle Colon
6 chr2:85934200-85941400 Enhancers Brain Anterior Caudate brain
7 chr2:85935800-85941200 Enhancers Brain Substantia Nigra brain
8 chr2:85935800-85941400 Enhancers Brain Dorsolateral Prefrontal Cortex brain
9 chr2:85935800-85941400 Enhancers Ovary ovary
10 chr2:85936400-85941600 Enhancers Right Atrium heart
11 chr2:85936600-85940800 Enhancers Placenta Placenta
12 chr2:85936600-85941400 Enhancers Fetal Lung lung
13 chr2:85937000-85941400 Enhancers Lung lung
14 chr2:85937000-85941400 Enhancers Skeletal Muscle Female skeletal muscle
15 chr2:85937000-85941400 Enhancers Spleen Spleen
16 chr2:85937200-85942200 Enhancers Stomach Mucosa stomach
17 chr2:85937600-85943400 Weak transcription Fetal Heart heart
18 chr2:85937800-85941200 Enhancers Fetal Muscle Leg muscle
19 chr2:85937800-85944800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
20 chr2:85938400-85941600 Enhancers Left Ventricle heart
21 chr2:85938600-85940800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
22 chr2:85938600-85941000 Weak transcription Gastric stomach
23 chr2:85938800-85941600 Enhancers Adipose Nuclei Adipose
24 chr2:85939200-85946600 Weak transcription Stomach Smooth Muscle stomach
25 chr2:85939600-85941400 Enhancers Psoas Muscle Psoas
26 chr2:85939800-85940800 Enhancers Fetal Muscle Trunk muscle
27 chr2:85939800-85940800 Enhancers Rectal Mucosa Donor 29 rectum
28 chr2:85939800-85941200 Enhancers Sigmoid Colon Sigmoid Colon
29 chr2:85940000-85940800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr2:85940000-85941200 Enhancers Muscle Satellite Cultured Cells --
31 chr2:85940000-85941400 Enhancers Brain Inferior Temporal Lobe brain
32 chr2:85940000-85941400 Enhancers Pancreas Pancrea
33 chr2:85940000-85941600 Enhancers Right Ventricle heart
34 chr2:85940000-85941800 Weak transcription Thymus Thymus
35 chr2:85940000-85942400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
36 chr2:85940000-85944000 Enhancers Primary hematopoietic stem cells short term culture blood
37 chr2:85940200-85940800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
38 chr2:85940200-85940800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
39 chr2:85940200-85940800 Enhancers Brain Cingulate Gyrus brain
40 chr2:85940200-85940800 Enhancers Rectal Mucosa Donor 31 rectum
41 chr2:85940200-85940800 Enhancers HSMM muscle
42 chr2:85940200-85941200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
43 chr2:85940200-85941200 Enhancers Esophagus oesophagus
44 chr2:85940200-85941200 Enhancers HSMMtube muscle
45 chr2:85940200-85942600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr2:85940200-85946600 Weak transcription Primary B cells from cord blood blood
47 chr2:85940200-85947800 Enhancers Primary neutrophils fromperipheralblood blood
48 chr2:85940400-85940800 Enhancers HMEC breast
49 chr2:85940400-85941200 Enhancers Fetal Kidney kidney
50 chr2:85940400-85941800 Weak transcription Primary Natural Killer cells fromperipheralblood blood

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Last update: Aug 31, 2015