The 2.0 version of rSNPBase

Variant report

Variant rs34223781
Chromosome Location chr15:41863230-41863231
allele -/T
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:41852200-41877400 Weak transcription Aorta Aorta
2 chr15:41852400-41877200 Weak transcription Colon Smooth Muscle Colon
3 chr15:41852600-41877400 Weak transcription HMEC breast
4 chr15:41852800-41877400 Weak transcription NHEK skin
5 chr15:41853200-41872600 Weak transcription Hela-S3 cervix
6 chr15:41853400-41870600 Weak transcription Stomach Mucosa stomach
7 chr15:41853800-41864000 Genic enhancers Brain Cingulate Gyrus brain
8 chr15:41854000-41871400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
9 chr15:41854200-41877000 Weak transcription Fetal Brain Male brain
10 chr15:41855400-41863400 Weak transcription Muscle Satellite Cultured Cells --
11 chr15:41855400-41864400 Genic enhancers Brain Hippocampus Middle brain
12 chr15:41855400-41877000 Weak transcription Breast Myoepithelial Primary Cells Breast
13 chr15:41855400-41877200 Weak transcription Duodenum Smooth Muscle Duodenum
14 chr15:41857400-41864000 Genic enhancers Brain Inferior Temporal Lobe brain
15 chr15:41859000-41865400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
16 chr15:41859000-41866200 Weak transcription NHDF-Ad bronchial
17 chr15:41859000-41869000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
18 chr15:41859600-41865800 Strong transcription Stomach Smooth Muscle stomach
19 chr15:41859600-41868000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
20 chr15:41860200-41866200 Strong transcription Esophagus oesophagus
21 chr15:41860800-41871800 Strong transcription Brain Germinal Matrix brain
22 chr15:41861000-41863600 Genic enhancers Brain Substantia Nigra brain
23 chr15:41861000-41877200 Weak transcription HUVEC blood vessel
24 chr15:41861200-41865200 Weak transcription Gastric stomach
25 chr15:41861200-41867400 Weak transcription Left Ventricle heart
26 chr15:41861200-41870000 Strong transcription Cortex derived primary cultured neurospheres brain
27 chr15:41861200-41870000 Weak transcription HSMMtube muscle
28 chr15:41861200-41871200 Weak transcription Small Intestine intestine
29 chr15:41861200-41877000 Weak transcription Placenta Amnion Placenta Amnion
30 chr15:41861400-41863600 Strong transcription Fetal Lung lung
31 chr15:41861400-41865000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
32 chr15:41861400-41865400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
33 chr15:41861400-41867400 Weak transcription Right Ventricle heart
34 chr15:41861400-41868000 Strong transcription iPS-15b Cell Line embryonic stem cell
35 chr15:41861400-41870000 Strong transcription Fetal Muscle Leg muscle
36 chr15:41861400-41870400 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
37 chr15:41861400-41870400 Strong transcription Fetal Stomach stomach
38 chr15:41861400-41870600 Weak transcription ES-WA7 Cell Line embryonic stem cell
39 chr15:41861400-41870600 Strong transcription Fetal Muscle Trunk muscle
40 chr15:41861400-41870800 Strong transcription HUES6 Cell Line embryonic stem cell
41 chr15:41861400-41871000 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
42 chr15:41861400-41871400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
43 chr15:41861400-41871400 Strong transcription HUES48 Cell Line embryonic stem cell
44 chr15:41861400-41873200 Weak transcription K562 blood
45 chr15:41861600-41868000 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
46 chr15:41861600-41868200 Strong transcription iPS-20b Cell Line embryonic stem cell
47 chr15:41861600-41871400 Strong transcription H9 Cell Line embryonic stem cell
48 chr15:41861600-41871400 Strong transcription HUES64 Cell Line embryonic stem cell
49 chr15:41861800-41864200 Strong transcription Brain Anterior Caudate brain
50 chr15:41861800-41866200 Strong transcription Placenta Placenta

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Last update: Aug 31, 2015