Variant report

Variant	rs34226209
Chromosome Location	chr6:159889488-159889489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs171297	0.83[EUR][1000 genomes]
rs192138	0.96[EUR][1000 genomes]
rs2167609	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs240830	0.96[EUR][1000 genomes]
rs240831	0.96[EUR][1000 genomes]
rs240833	0.96[EUR][1000 genomes]
rs240834	0.96[EUR][1000 genomes]
rs240838	0.96[EUR][1000 genomes]
rs240854	0.96[EUR][1000 genomes]
rs240855	0.96[EUR][1000 genomes]
rs240862	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs240863	0.96[EUR][1000 genomes]
rs240864	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs240865	0.96[EUR][1000 genomes]
rs34355068	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs365557	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6902155	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6929061	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030483	chr6:159475679-159910480	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv538490	chr6:159475679-159910480	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	esv2763604	chr6:159509373-159942955	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1019191	chr6:159555100-160043247	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:159886400-159890800	Enhancers	Primary B cells from peripheral blood	blood
2	chr6:159887600-159890200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:159888000-159889600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:159888000-159889600	Enhancers	HSMMtube	muscle
5	chr6:159888200-159889600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:159888800-159889600	Enhancers	GM12878-XiMat	blood
7	chr6:159889200-159890000	Enhancers	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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