Variant report

Variant	rs34230181
Chromosome Location	chr14:71066871-71066872
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:17)
CpG islands
(count:61)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:17 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	WRNIP1	chr14:71066787-71067385	GM12878	blood:	n/a	n/a
2	GABPA	chr14:71066685-71067608	A549	lung:	n/a	n/a
3	GABPA	chr14:71066868-71067686	SK-N-SH	brain:	n/a	n/a
4	POLR2A	chr14:71066843-71068290	Hela-S3	cervix:	n/a	n/a
5	SRF	chr14:71066844-71067753	HCT-116	colon:	n/a	chr14:71067669-71067687 chr14:71067671-71067684 chr14:71067672-71067689
6	YY1	chr14:71066839-71067571	SK-N-SH_RA	brain:	n/a	n/a
7	GABPA	chr14:71066409-71067878	MCF-7	breast:	n/a	n/a
8	GABPA	chr14:71066829-71067746	MCF-7	breast:	n/a	n/a
9	HCFC1	chr14:71066618-71068483	Hela-S3	cervix:	n/a	n/a
10	NFIC	chr14:71066868-71067601	GM12878	blood:	n/a	n/a
11	CREB1	chr14:71066854-71067722	GM12878	blood:	n/a	n/a
12	REST	chr14:71066764-71067784	H1-neurons	neurons:	n/a	chr14:71067753-71067766
13	MXI1	chr14:71066659-71068211	SK-N-SH	brain:	n/a	n/a
14	MAZ	chr14:71066742-71067845	IMR90	lung:	n/a	chr14:71067753-71067762
15	YY1	chr14:71066743-71067761	SK-N-SH	brain:	n/a	n/a
16	SIN3A	chr14:71066871-71067560	H1-hESC	embryonic stem cell:	n/a	n/a
17	YY1	chr14:71066791-71067468	H1-hESC	embryonic stem cell:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr14:71066865-71066915	Caco-2	colon:	n/a
2	chr14:71066865-71066915	SK-N-SH	brain:	n/a
3	chr14:71066865-71066915	GM12892	blood:	n/a
4	chr14:71066865-71066915	GM12878	blood:	n/a
5	chr14:71066865-71066915	CMK	blood:	n/a
6	chr14:71066865-71066915	SAEC	small airway:	n/a
7	chr14:71066865-71066915	HCT-116	colon:	n/a
8	chr14:71066865-71066915	HCPEpiC	choroid plexus:	n/a
9	chr14:71066865-71066915	GM06990	blood:	n/a
10	chr14:71066865-71066915	HEK293	kidney:	embryo
11	chr14:71066865-71066915	A549	lung:	n/a
12	chr14:71066865-71066915	H1-hESC	embryonic stem cell:	embryo
13	chr14:71066865-71066915	ovcar-3	ovarian:	n/a
14	chr14:71066865-71066915	NB4	blood:	n/a
15	chr14:71066865-71066915	SK-N-MC	brain:	n/a
16	chr14:71066865-71066915	BJ	skin:	n/a
17	chr14:71066865-71066915	Hepatocyte	liver:	n/a
18	chr14:71066865-71066915	HAEpiC	amniotic membrane:	n/a
19	chr14:71066865-71066915	HPAEpiC	pulmonary alveolar:	n/a
20	chr14:71066865-71066915	PFSK-1	brain:	n/a
21	chr14:71066865-71066915	HCF	heart:	n/a
22	chr14:71066865-71066915	PrEC	prostate:	n/a
23	chr14:71066865-71066915	HIPEpiC	eye:	n/a
24	chr14:71066865-71066915	Hela-S3	cervix:	n/a
25	chr14:71066865-71066915	LNCaP	prostate:	n/a
26	chr14:71066865-71066915	HEEpiC	esophagus:	n/a
27	chr14:71066865-71066915	HMEC	breast:	n/a
28	chr14:71066865-71066915	AG09309	skin:	n/a
29	chr14:71066865-71066915	HUVEC	blood vessel:	n/a
30	chr14:71066865-71066915	U87	brain:	n/a
31	chr14:71066865-71066915	Jurkat	blood:	n/a
32	chr14:71066865-71066915	HepG2	liver:	n/a
33	chr14:71066865-71066915	SK-N-SH_RA	brain:	n/a
34	chr14:71066865-71066915	HL-60	blood:	n/a
35	chr14:71066865-71066915	GM19239	blood:	n/a
36	chr14:71066865-71066915	NHBE	bronchial:	n/a
37	chr14:71066865-71066915	MCF-7	breast:	n/a
38	chr14:71066865-71066915	AG10803	skin:	n/a
39	chr14:71066865-71066915	T-47D	breast:	n/a
40	chr14:71066865-71066915	K562	blood:	n/a
41	chr14:71066865-71066915	ECC-1	luminal epithelium:	n/a
42	chr14:71066865-71066915	GM12891	blood:	n/a
43	chr14:71066865-71066915	NH-A	brain:	n/a
44	chr14:71066865-71066915	AoSMC	blood vessel:	n/a
45	chr14:71066865-71066915	AG04450	lung:	fetal
46	chr14:71066865-71066915	RPTEC	kidney:	n/a
47	chr14:71066865-71066915	MCF10A-Er-Src	breast:	n/a
48	chr14:71066865-71066915	HCM	heart:	n/a
49	chr14:71066865-71066915	HNPCEpiC	eye:	n/a
50	chr14:71066865-71066915	HRPEpiC	eye:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71060891..71063654-chr14:71065972..71067588,2	MCF-7	breast:
2	chr14:70232810..70235786-chr14:71065753..71068797,4	MCF-7	breast:

No data

Variant related genes	Relation type
MED6	TF binding region
MED6	CpG island
ENSG00000100650	Chromatin interaction
ENSG00000258951	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3445059	chr14:71066799-71068647	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71065600-71068400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr14:71065800-71067000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr14:71065800-71067000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr14:71066000-71067000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr14:71066000-71067000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr14:71066000-71067000	Flanking Active TSS	Liver	Liver
7	chr14:71066000-71067000	Flanking Active TSS	Brain Angular Gyrus	brain
8	chr14:71066000-71067000	Flanking Active TSS	Brain Germinal Matrix	brain
9	chr14:71066000-71067000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
10	chr14:71066000-71067000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
11	chr14:71066000-71067200	Flanking Active TSS	Primary hematopoietic stem cells	blood
12	chr14:71066000-71068200	Active TSS	H1 Cell Line	embryonic stem cell
13	chr14:71066000-71068200	Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr14:71066000-71068400	Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr14:71066000-71068600	Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr14:71066200-71067000	Flanking Active TSS	Primary T cells from cord blood	blood
17	chr14:71066200-71067000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
18	chr14:71066200-71067000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
19	chr14:71066200-71067000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
20	chr14:71066200-71067000	Flanking Active TSS	Adipose Nuclei	Adipose
21	chr14:71066200-71067000	Flanking Active TSS	Duodenum Mucosa	Duodenum
22	chr14:71066200-71067000	Flanking Active TSS	Fetal Lung	lung
23	chr14:71066200-71067000	Flanking Active TSS	HUVEC	blood vessel
24	chr14:71066200-71067000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
25	chr14:71066200-71067200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
26	chr14:71066200-71068000	Active TSS	H9 Cell Line	embryonic stem cell
27	chr14:71066200-71068200	Active TSS	K562	blood
28	chr14:71066200-71068400	Active TSS	iPS-18 Cell Line	embryonic stem cell
29	chr14:71066400-71067000	Flanking Active TSS	Primary B cells from cord blood	blood
30	chr14:71066400-71067000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr14:71066400-71067000	Flanking Active TSS	Fetal Muscle Leg	muscle
32	chr14:71066400-71067000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
33	chr14:71066400-71067000	Flanking Active TSS	Osteobl	bone
34	chr14:71066400-71067800	Active TSS	Esophagus	oesophagus
35	chr14:71066400-71067800	Active TSS	Fetal Thymus	thymus
36	chr14:71066400-71067800	Active TSS	Lung	lung
37	chr14:71066400-71068000	Active TSS	ES-I3 Cell Line	embryonic stem cell
38	chr14:71066400-71068000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr14:71066400-71068000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr14:71066400-71068000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr14:71066400-71068000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
42	chr14:71066400-71068000	Active TSS	Aorta	Aorta
43	chr14:71066400-71068000	Active TSS	Fetal Intestine Small	intestine
44	chr14:71066400-71068000	Active TSS	Fetal Kidney	kidney
45	chr14:71066400-71068000	Active TSS	Fetal Muscle Trunk	muscle
46	chr14:71066400-71068000	Active TSS	Psoas Muscle	Psoas
47	chr14:71066400-71068000	Active TSS	A549	lung
48	chr14:71066400-71068000	Active TSS	NH-A	brain
49	chr14:71066400-71068200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr14:71066400-71068200	Active TSS	iPS-15b Cell Line	embryonic stem cell

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