Variant report

Variant	rs34231434
Chromosome Location	chr2:37593428-37593429
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37591915..37594227-chr2:37596693..37599097,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17020316	1.00[AFR][1000 genomes]
rs2372996	1.00[AFR][1000 genomes]
rs2372997	1.00[AFR][1000 genomes]
rs55698418	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430724	chr2:37546820-37628704	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv2685	chr2:37550096-37594923	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37572600-37595400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:37577400-37607000	Weak transcription	Spleen	Spleen
3	chr2:37578200-37605400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:37578400-37604200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:37578600-37601200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr2:37578800-37602200	Weak transcription	Colon Smooth Muscle	Colon
7	chr2:37579800-37603000	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr2:37580200-37603400	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr2:37581600-37595600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:37583600-37607200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr2:37589200-37593800	Weak transcription	Esophagus	oesophagus
12	chr2:37589200-37602800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr2:37589800-37602800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr2:37590200-37594000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr2:37591400-37594000	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr2:37591600-37595600	Weak transcription	Gastric	stomach
17	chr2:37591600-37598200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr2:37592200-37595800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr2:37592400-37593600	Enhancers	Osteobl	bone
20	chr2:37592400-37594200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr2:37592400-37594200	Enhancers	HSMM	muscle
22	chr2:37592400-37594400	Enhancers	Muscle Satellite Cultured Cells	--
23	chr2:37592400-37594600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr2:37592400-37594600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr2:37592400-37594600	Enhancers	HSMMtube	muscle
26	chr2:37592600-37593600	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr2:37592600-37593800	Bivalent Enhancer	GM12878-XiMat	blood
28	chr2:37592600-37594000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr2:37592600-37595800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr2:37592800-37594600	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr2:37592800-37595600	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr2:37592800-37595800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr2:37592800-37595800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr2:37592800-37595800	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr2:37593000-37593600	Enhancers	Primary T cells fromperipheralblood	blood
36	chr2:37593000-37594200	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr2:37593000-37595800	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr2:37593200-37593600	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr2:37593200-37596400	Enhancers	Primary T cells from cord blood	blood
40	chr2:37593400-37595600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr2:37593400-37597800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr2:37593400-37602800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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