Variant report

Variant	rs34232755
Chromosome Location	chr3:88314029-88314030
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12634175	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2199015	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56999350	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59326420	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61329039	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62269289	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6777576	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6778788	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6787061	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6788674	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs754816	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7647666	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916330	chr3:88083580-88884125	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1013031	chr3:88256289-88347505	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv3366990	chr3:88293106-88346403	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88313400-88316400	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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