Variant report

Variant	rs34236296
Chromosome Location	chr5:179777127-179777128
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:179775628..179778352-chr5:179778745..179780762,2	MCF-7	breast:
2	chr5:179776807..179778775-chr5:179896611..179898165,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131459	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13164734	0.87[EUR][1000 genomes]
rs13172268	0.81[EUR][1000 genomes]
rs13179839	0.84[EUR][1000 genomes]
rs13188590	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1559114	0.82[AFR][1000 genomes]
rs34253331	0.97[AFR][1000 genomes]
rs34473901	0.80[AFR][1000 genomes]
rs34778234	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35605149	0.90[AFR][1000 genomes]
rs4566752	0.81[AFR][1000 genomes]
rs4572964	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4627952	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6869637	0.82[EUR][1000 genomes]
rs7727934	0.87[EUR][1000 genomes]
rs9686362	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9686363	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9687074	0.90[AFR][1000 genomes]
rs9791145	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033706	chr5:179402769-179806356	Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
2	nsv1023914	chr5:179649883-180040672	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv537983	chr5:179649883-180040672	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1030697	chr5:179710469-180686563	ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	184 gene(s)	inside rSNPs	diseases
5	nsv883290	chr5:179712060-179818868	Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv830563	chr5:179717693-179898609	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv1026417	chr5:179721376-180291360	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
8	nsv1031836	chr5:179742033-180676122	Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
9	nsv537984	chr5:179742033-180676122	Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
10	nsv949199	chr5:179743553-180696889	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
11	nsv883291	chr5:179755559-179818868	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	nsv984575	chr5:179759624-179791220	Weak transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:179757000-179779000	Weak transcription	Esophagus	oesophagus
2	chr5:179764000-179778800	Weak transcription	Pancreas	Pancrea
3	chr5:179770400-179779000	Weak transcription	Gastric	stomach
4	chr5:179770600-179778600	Weak transcription	Right Atrium	heart
5	chr5:179771200-179777400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr5:179771200-179778600	Weak transcription	Lung	lung
7	chr5:179771400-179777400	Weak transcription	HSMMtube	muscle
8	chr5:179771600-179777800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:179771600-179778400	Weak transcription	HSMM	muscle
10	chr5:179771600-179778600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:179771600-179778600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:179771800-179777400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr5:179771800-179777400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr5:179771800-179777600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr5:179771800-179777600	Weak transcription	Osteobl	bone
16	chr5:179771800-179778400	Weak transcription	Hela-S3	cervix
17	chr5:179771800-179778600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:179772000-179777200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr5:179772600-179779200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr5:179773600-179777600	Genic enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr5:179773600-179777600	Weak transcription	Right Ventricle	heart
22	chr5:179773600-179778400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr5:179775000-179777600	Genic enhancers	HUES64 Cell Line	embryonic stem cell
24	chr5:179775000-179778200	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr5:179775400-179777400	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr5:179775400-179777800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr5:179775400-179778600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr5:179775400-179778600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr5:179775600-179777200	Weak transcription	NH-A	brain
30	chr5:179775600-179777800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr5:179775600-179777800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr5:179775800-179777200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr5:179776400-179777200	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr5:179776400-179777400	Strong transcription	Fetal Stomach	stomach
35	chr5:179776400-179777600	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr5:179776600-179777400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr5:179776600-179777600	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr5:179776600-179777600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr5:179776600-179778000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr5:179776600-179778600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr5:179776600-179778600	Genic enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr5:179776800-179777200	Flanking Active TSS	Adipose Nuclei	Adipose
43	chr5:179776800-179777400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr5:179776800-179777600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr5:179776800-179777600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr5:179776800-179778000	Enhancers	Stomach Smooth Muscle	stomach
47	chr5:179776800-179778800	Enhancers	Brain Angular Gyrus	brain
48	chr5:179777000-179777200	Enhancers	Left Ventricle	heart
49	chr5:179777000-179777200	ZNF genes & repeats	Ovary	ovary
50	chr5:179777000-179777200	Enhancers	Placenta Amnion	Placenta Amnion

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