Variant report

Variant	rs34240040
Chromosome Location	chr15:35363484-35363485
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs34494937	0.81[EUR][1000 genomes]
rs35326180	0.81[EUR][1000 genomes]
rs55800503	0.86[AMR][1000 genomes]
rs55804632	0.81[EUR][1000 genomes]
rs60894685	0.86[AMR][1000 genomes]
rs71464898	0.81[EUR][1000 genomes]
rs73377084	0.86[AMR][1000 genomes]
rs73379445	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35357000-35379400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:35360000-35370400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr15:35362800-35364000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr15:35363000-35363600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr15:35363000-35363800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
6	chr15:35363200-35363600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
7	chr15:35363200-35363600	Active TSS	Primary B cells from cord blood	blood
8	chr15:35363200-35363600	Flanking Active TSS	Placenta	Placenta
9	chr15:35363200-35364000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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