Variant report

Variant rs342519
Chromosome Location chr3:42532538-42532539
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:50 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:42528200-42535400 Enhancers Primary monocytes fromperipheralblood blood
2 chr3:42530200-42532600 Enhancers Stomach Mucosa stomach
3 chr3:42530200-42535200 Enhancers Placenta Placenta
4 chr3:42530200-42535600 Enhancers Primary hematopoietic stem cells short term culture blood
5 chr3:42530200-42535600 Enhancers Lung lung
6 chr3:42530800-42532600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
7 chr3:42530800-42532600 Enhancers Pancreas Pancrea
8 chr3:42530800-42532800 Enhancers NHEK skin
9 chr3:42530800-42535000 Enhancers Primary B cells from cord blood blood
10 chr3:42530800-42535000 Enhancers Primary B cells from peripheral blood blood
11 chr3:42531000-42532600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr3:42531000-42532600 Enhancers Esophagus oesophagus
13 chr3:42531000-42532600 Enhancers Hela-S3 cervix
14 chr3:42531000-42532600 Enhancers HMEC breast
15 chr3:42531000-42532600 Enhancers HSMMtube muscle
16 chr3:42531000-42532800 Enhancers Rectal Mucosa Donor 31 rectum
17 chr3:42531000-42534400 Enhancers Breast Myoepithelial Primary Cells Breast
18 chr3:42531200-42532600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
19 chr3:42531200-42532600 Enhancers HUES48 Cell Line embryonic stem cell
20 chr3:42531200-42532600 Enhancers Left Ventricle heart
21 chr3:42531200-42532600 Enhancers Rectal Mucosa Donor 29 rectum
22 chr3:42531200-42532600 Enhancers HUVEC blood vessel
23 chr3:42531200-42532800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
24 chr3:42531400-42533600 Weak transcription Adipose Nuclei Adipose
25 chr3:42531600-42532600 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
26 chr3:42531600-42532600 Enhancers A549 lung
27 chr3:42531800-42532600 Enhancers iPS-15b Cell Line embryonic stem cell
28 chr3:42531800-42532600 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
29 chr3:42531800-42532600 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
30 chr3:42531800-42532800 Enhancers Fetal Heart heart
31 chr3:42532000-42532600 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
32 chr3:42532000-42532600 Enhancers HUES6 Cell Line embryonic stem cell
33 chr3:42532000-42532800 Enhancers iPS-18 Cell Line embryonic stem cell
34 chr3:42532000-42533400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
35 chr3:42532000-42533800 Weak transcription Right Ventricle heart
36 chr3:42532200-42532600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
37 chr3:42532200-42533600 Weak transcription Fetal Lung lung
38 chr3:42532200-42533600 Weak transcription Spleen Spleen
39 chr3:42532200-42533800 Weak transcription Duodenum Mucosa Duodenum
40 chr3:42532200-42533800 Weak transcription Fetal Muscle Leg muscle
41 chr3:42532200-42534000 Weak transcription Colon Smooth Muscle Colon
42 chr3:42532200-42534200 Weak transcription Right Atrium heart
43 chr3:42532200-42534400 Enhancers Primary Natural Killer cells fromperipheralblood blood
44 chr3:42532200-42534800 Weak transcription Skeletal Muscle Male skeletal muscle
45 chr3:42532200-42538800 Weak transcription H9 Cell Line embryonic stem cell
46 chr3:42532400-42533200 Enhancers Monocytes-CD14+_RO01746 blood
47 chr3:42532400-42533600 Weak transcription Aorta Aorta
48 chr3:42532400-42533800 Weak transcription Gastric stomach
49 chr3:42532400-42534600 Weak transcription Skeletal Muscle Female skeletal muscle
50 chr3:42532400-42535600 Enhancers GM12878-XiMat blood

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