Variant report

Variant	rs34253418
Chromosome Location	chr2:173900873-173900874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:173900217..173904593-chr2:173939511..173942329,3	MCF-7	breast:
2	chr2:173900266..173903134-chr2:174828493..174830861,2	MCF-7	breast:
3	chr2:173896984..173899063-chr2:173900402..173903376,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000172845	Chromatin interaction
ENSG00000091436	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs58157989	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173868000-173902000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:173877200-173901600	Weak transcription	Gastric	stomach
3	chr2:173881200-173912800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr2:173888800-173905600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr2:173888800-173906600	Weak transcription	Lung	lung
6	chr2:173891000-173908000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr2:173892600-173906800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr2:173892800-173901600	Weak transcription	Pancreas	Pancrea
9	chr2:173892800-173902400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr2:173893000-173908800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr2:173893000-173913200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr2:173893200-173901600	Weak transcription	Right Atrium	heart
13	chr2:173893200-173902400	Weak transcription	Aorta	Aorta
14	chr2:173893200-173902600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr2:173893200-173922000	Weak transcription	Brain Anterior Caudate	brain
16	chr2:173893800-173908200	Weak transcription	Right Ventricle	heart
17	chr2:173894000-173901600	Weak transcription	Ovary	ovary
18	chr2:173894000-173902000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr2:173894000-173909200	Weak transcription	Fetal Stomach	stomach
20	chr2:173896800-173901600	Weak transcription	Left Ventricle	heart
21	chr2:173897000-173908200	Weak transcription	HMEC	breast
22	chr2:173897200-173901600	Weak transcription	Fetal Muscle Leg	muscle
23	chr2:173897200-173902000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr2:173897400-173902000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr2:173899000-173902400	Weak transcription	A549	lung
26	chr2:173899600-173901600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr2:173900400-173902200	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr2:173900600-173901000	Genic enhancers	Brain Angular Gyrus	brain
29	chr2:173900600-173902600	Enhancers	Fetal Heart	heart
30	chr2:173900600-173903000	Strong transcription	Liver	Liver
31	chr2:173900600-173903000	Enhancers	Fetal Intestine Small	intestine
32	chr2:173900800-173901000	Enhancers	Psoas Muscle	Psoas
33	chr2:173900800-173901600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr2:173900800-173902800	Enhancers	Stomach Mucosa	stomach

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