Variant report

Variant	rs34261818
Chromosome Location	chr8:10010906-10010907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10107929	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12334964	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12678468	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13257766	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13281788	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17151209	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1905628	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28424583	0.88[ASN][1000 genomes]
rs34405200	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34697655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35109120	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35665501	0.87[ASN][1000 genomes]
rs4506211	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4527876	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6984070	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6986307	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6986977	0.91[EUR][1000 genomes]
rs73530954	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916493	chr8:9806580-10029482	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1034343	chr8:9948342-10014155	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv831230	chr8:9953343-10139350	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1027280	chr8:9958259-10058984	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv1850829	chr8:9958321-10045451	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv890344	chr8:9995515-10060638	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9996400-10020200	Weak transcription	Pancreas	Pancrea
2	chr8:9996600-10036200	Weak transcription	Primary T cells from cord blood	blood
3	chr8:10003400-10026600	Weak transcription	Liver	Liver
4	chr8:10007400-10011000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:10007400-10011000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr8:10008000-10013000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr8:10008200-10011000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr8:10008200-10021400	Weak transcription	Fetal Brain Female	brain
9	chr8:10008400-10011000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:10008400-10011000	Enhancers	HMEC	breast
11	chr8:10008400-10011200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:10008400-10011200	Enhancers	NHEK	skin
13	chr8:10008600-10011000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:10008800-10016600	Weak transcription	Fetal Brain Male	brain
15	chr8:10008800-10018400	Weak transcription	Brain Germinal Matrix	brain
16	chr8:10009200-10011000	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr8:10009200-10011000	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr8:10009200-10011000	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr8:10009200-10011000	Enhancers	Brain Angular Gyrus	brain
20	chr8:10009200-10011000	Enhancers	NHDF-Ad	bronchial
21	chr8:10009400-10011000	Enhancers	HSMMtube	muscle
22	chr8:10009600-10011000	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr8:10009600-10011400	Enhancers	Hela-S3	cervix
24	chr8:10010200-10011000	Enhancers	H9 Cell Line	embryonic stem cell
25	chr8:10010200-10011000	Enhancers	Left Ventricle	heart
26	chr8:10010200-10011200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr8:10010400-10011000	Enhancers	A549	lung
28	chr8:10010400-10011200	Enhancers	HUVEC	blood vessel
29	chr8:10010400-10015200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr8:10010600-10011000	Enhancers	Muscle Satellite Cultured Cells	--
31	chr8:10010600-10014200	Weak transcription	Primary hematopoietic stem cells	blood

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