Variant report

Variant	rs34266045
Chromosome Location	chr3:89156006-89156007
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs35087119	1.00[ASN][1000 genomes]
rs35529725	1.00[ASN][1000 genomes]
rs60942712	1.00[ASN][1000 genomes]
rs72921795	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877159	chr3:89018866-89207222	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv998460	chr3:89064073-89188335	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv536638	chr3:89064073-89188335	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89152800-89156600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:89153000-89156400	Weak transcription	Left Ventricle	heart
3	chr3:89154000-89156200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:89154400-89156200	Weak transcription	Osteobl	bone
5	chr3:89154400-89156600	Weak transcription	GM12878-XiMat	blood
6	chr3:89155800-89156200	Flanking Active TSS	Fetal Brain Female	brain
7	chr3:89156000-89156200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
8	chr3:89156000-89156200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:89156000-89156200	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr3:89156000-89156200	Enhancers	Brain Substantia Nigra	brain
11	chr3:89156000-89156200	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
12	chr3:89156000-89156200	Enhancers	Fetal Muscle Leg	muscle
13	chr3:89156000-89156200	Weak transcription	HMEC	breast
14	chr3:89156000-89156400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr3:89156000-89156600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr3:89156000-89156800	Active TSS	Rectal Smooth Muscle	rectum
17	chr3:89156000-89157200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
18	chr3:89156000-89158200	Active TSS	Right Atrium	heart
19	chr3:89156000-89158800	Active TSS	Brain Germinal Matrix	brain
20	chr3:89156000-89159600	Active TSS	Fetal Brain Male	brain
21	chr3:89156000-89159800	Active TSS	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links