Variant report

Variant	rs34269971
Chromosome Location	chr7:27975140-27975141
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:27974814..27975434-chr8:89382039..89382866,2	MCF-7	breast:
2	chr7:27967354..27970328-chr7:27973178..27975197,2	K562	blood:
3	chr7:27779003..27781367-chr7:27974621..27976627,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106052	Chromatin interaction
ENSG00000229893	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17622746	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17622806	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2040666	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28566774	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34118973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3919460	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722747	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67716336	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs68104887	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6968704	0.88[ASN][1000 genomes]
rs7776540	0.89[EUR][1000 genomes]
rs7783465	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9801472	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1024819	chr7:27949955-28020969	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27941400-27990800	Weak transcription	Primary T cells from cord blood	blood
2	chr7:27942400-28005600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr7:27956600-27979800	Weak transcription	Aorta	Aorta
4	chr7:27957200-27979000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr7:27957600-28000800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:27961000-27976000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr7:27961000-27983400	Weak transcription	NH-A	brain
8	chr7:27963400-27978000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:27963600-27975600	Weak transcription	Fetal Heart	heart
10	chr7:27963600-27976400	Weak transcription	Psoas Muscle	Psoas
11	chr7:27963800-27975400	Weak transcription	Fetal Muscle Leg	muscle
12	chr7:27964000-27979200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr7:27964600-27975400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:27966400-27976600	Weak transcription	Primary B cells from cord blood	blood
15	chr7:27966600-27975400	Weak transcription	Left Ventricle	heart
16	chr7:27968400-27979000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr7:27969200-27975400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr7:27970000-27980000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr7:27972000-27977400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr7:27972200-27975800	Enhancers	NHDF-Ad	bronchial
21	chr7:27972600-27979200	Weak transcription	Primary B cells from peripheral blood	blood
22	chr7:27972800-27979000	Weak transcription	Fetal Stomach	stomach
23	chr7:27973400-27976200	Weak transcription	Rectal Smooth Muscle	rectum
24	chr7:27973600-27979000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr7:27973600-27982600	Weak transcription	Spleen	Spleen
26	chr7:27973800-27975800	Weak transcription	Colon Smooth Muscle	Colon
27	chr7:27973800-27976200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr7:27973800-27978600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr7:27973800-27979200	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr7:27973800-27986200	Weak transcription	HSMM	muscle
31	chr7:27974000-27975400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr7:27974000-27976000	Weak transcription	A549	lung
33	chr7:27974000-27979200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr7:27974000-27980800	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr7:27974000-27981200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr7:27974000-27981400	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr7:27974000-27990800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr7:27974400-27975600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr7:27974400-27980200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr7:27975000-27975600	Enhancers	Adipose Nuclei	Adipose

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