Variant report

Variant	rs34283429
Chromosome Location	chr6:25342915-25342916
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:25342735..25343236-chr9:33263280..33263888,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12192517	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12193883	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1569558	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16890409	0.89[ASN][1000 genomes]
rs2328853	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4712910	0.88[ASN][1000 genomes]
rs4712911	0.81[ASN][1000 genomes]
rs4712915	0.85[ASN][1000 genomes]
rs4712916	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4712917	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5013971	0.86[ASN][1000 genomes]
rs73399941	0.85[ASN][1000 genomes]
rs9393641	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883485	chr6:25259137-25437986	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv883486	chr6:25260434-25422369	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv883487	chr6:25280119-25508868	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv830612	chr6:25342408-25509758	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25332000-25346800	Weak transcription	Ovary	ovary
2	chr6:25333200-25343800	Enhancers	Fetal Intestine Small	intestine
3	chr6:25333800-25346400	Weak transcription	Left Ventricle	heart
4	chr6:25335200-25359800	Weak transcription	Thymus	Thymus
5	chr6:25336800-25344000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:25336800-25350200	Weak transcription	Lung	lung
7	chr6:25336800-25354600	Weak transcription	Right Atrium	heart
8	chr6:25337000-25343200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr6:25337400-25357800	Weak transcription	NHEK	skin
10	chr6:25337600-25343800	Enhancers	Fetal Intestine Large	intestine
11	chr6:25338800-25343000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:25339600-25346200	Weak transcription	Fetal Lung	lung
13	chr6:25340000-25343000	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr6:25340000-25349400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:25340400-25343600	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr6:25340400-25344000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:25340800-25343400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr6:25340800-25344800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:25341000-25343400	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr6:25341000-25343800	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr6:25341000-25352800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:25341000-25359400	Weak transcription	Pancreas	Pancrea
23	chr6:25341200-25343000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
24	chr6:25341200-25343000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:25341400-25343400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:25341400-25343800	Weak transcription	Aorta	Aorta
27	chr6:25341400-25345800	Weak transcription	Gastric	stomach
28	chr6:25341600-25344800	Weak transcription	Stomach Mucosa	stomach
29	chr6:25342000-25343800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr6:25342200-25343600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr6:25342200-25343800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr6:25342200-25346400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:25342400-25343600	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr6:25342400-25343800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:25342400-25344000	Enhancers	Primary hematopoietic stem cells	blood
36	chr6:25342400-25344000	Enhancers	Duodenum Mucosa	Duodenum
37	chr6:25342400-25345600	Weak transcription	Small Intestine	intestine
38	chr6:25342400-25346400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr6:25342400-25350600	Weak transcription	HSMMtube	muscle
40	chr6:25342600-25343400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr6:25342600-25343400	Enhancers	HMEC	breast
42	chr6:25342600-25343800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:25342600-25343800	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr6:25342600-25343800	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr6:25342600-25343800	Enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr6:25342600-25343800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr6:25342600-25343800	Enhancers	Placenta Amnion	Placenta Amnion
48	chr6:25342600-25344000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr6:25342600-25344000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr6:25342800-25343000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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