Variant report

Variant	rs34287361
Chromosome Location	chr16:71832001-71832002
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:71829817..71832917-chr16:71838468..71842118,4	K562	blood:
2	chr16:71831763..71833409-chr16:71841752..71843561,2	MCF-7	breast:
3	chr16:71809920..71813337-chr16:71827529..71832113,4	K562	blood:
4	chr16:71826988..71830438-chr16:71831436..71833598,3	K562	blood:
5	chr16:71831282..71834654-chr16:71840292..71844031,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166747	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11866980	1.00[CHD][hapmap]
rs12598090	1.00[LWK][hapmap]
rs13334187	1.00[CHD][hapmap]
rs16973537	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv1817133	chr16:71705908-71837477	ZNF genes & repeats Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71779600-71841800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr16:71816000-71840400	Weak transcription	Fetal Kidney	kidney
3	chr16:71821400-71840000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr16:71823200-71832200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr16:71823200-71835200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr16:71823200-71840400	Weak transcription	HUVEC	blood vessel
7	chr16:71823200-71841400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr16:71823400-71833000	Weak transcription	HMEC	breast
9	chr16:71823400-71833200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr16:71823400-71834800	Weak transcription	Small Intestine	intestine
11	chr16:71823400-71836000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr16:71823400-71836800	Weak transcription	Brain Germinal Matrix	brain
13	chr16:71823400-71837400	Weak transcription	HSMM	muscle
14	chr16:71823400-71838600	Weak transcription	Brain Substantia Nigra	brain
15	chr16:71823400-71839800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr16:71823400-71840000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr16:71823400-71840000	Weak transcription	Brain Angular Gyrus	brain
18	chr16:71823400-71840000	Weak transcription	Brain Anterior Caudate	brain
19	chr16:71823400-71840000	Weak transcription	K562	blood
20	chr16:71823400-71840200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr16:71823400-71840200	Weak transcription	Duodenum Mucosa	Duodenum
22	chr16:71823400-71840400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr16:71823400-71840400	Weak transcription	Fetal Brain Male	brain
24	chr16:71823400-71840400	Weak transcription	NH-A	brain
25	chr16:71823400-71841000	Weak transcription	Colonic Mucosa	Colon
26	chr16:71823400-71841400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr16:71823400-71841400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr16:71823400-71841400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr16:71823400-71841600	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr16:71823400-71841600	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr16:71823400-71841600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr16:71823400-71841600	Weak transcription	Aorta	Aorta
33	chr16:71823400-71841800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr16:71823400-71841800	Weak transcription	Esophagus	oesophagus
35	chr16:71823400-71841800	Weak transcription	Pancreas	Pancrea
36	chr16:71823600-71838800	Weak transcription	Hela-S3	cervix
37	chr16:71823600-71839600	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr16:71823600-71840000	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr16:71823600-71840400	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr16:71823800-71837600	Weak transcription	Osteobl	bone
41	chr16:71823800-71840800	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr16:71825600-71839600	Weak transcription	Brain Hippocampus Middle	brain
43	chr16:71826400-71839600	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr16:71826400-71840200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr16:71826600-71840400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr16:71826600-71840400	Weak transcription	Right Ventricle	heart
47	chr16:71826800-71833600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr16:71827000-71840200	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr16:71827000-71841000	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr16:71827000-71841000	Weak transcription	Right Atrium	heart

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