Variant report

Variant	rs34289311
Chromosome Location	chr11:66369738-66369739
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:66366106..66376502-chr11:66378243..66386807,17	K562	blood:
2	chr11:66366218..66370656-chr11:66381863..66384866,5	MCF-7	breast:
3	chr11:66369001..66372002-chr11:66383720..66385688,4	MCF-7	breast:
4	chr11:66369093..66371332-chr11:66372275..66374529,3	MCF-7	breast:
5	chr11:66360351..66362912-chr11:66368673..66371357,4	K562	blood:
6	chr11:66360734..66364580-chr11:66368011..66371374,4	K562	blood:
7	chr11:66358617..66363403-chr11:66366526..66370072,6	MCF-7	breast:
8	chr11:66363080..66365268-chr11:66368011..66370677,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000199325	Chromatin interaction
ENSG00000239306	Chromatin interaction
ENSG00000248643	Chromatin interaction
ENSG00000173992	Chromatin interaction
ENSG00000182791	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs71457732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522277	chr11:66234023-66493825	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66361400-66369800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:66361400-66371800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:66361400-66382800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:66361400-66383400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:66361600-66372800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr11:66361600-66374400	Weak transcription	Psoas Muscle	Psoas
7	chr11:66361600-66377000	Weak transcription	HUVEC	blood vessel
8	chr11:66362200-66377200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:66363000-66372400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr11:66363000-66377200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr11:66363200-66370000	Weak transcription	HSMM	muscle
12	chr11:66363200-66383200	Weak transcription	Fetal Kidney	kidney
13	chr11:66363400-66382800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr11:66363400-66383200	Weak transcription	Fetal Brain Male	brain
15	chr11:66363600-66371600	Weak transcription	K562	blood
16	chr11:66363600-66374600	Weak transcription	Stomach Mucosa	stomach
17	chr11:66363600-66377200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr11:66363800-66377400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr11:66366000-66374200	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr11:66366200-66370000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr11:66366200-66370800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr11:66366400-66369800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:66366400-66370000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:66366400-66370600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr11:66366400-66370600	Strong transcription	HepG2	liver
26	chr11:66366400-66373800	Strong transcription	Brain Anterior Caudate	brain
27	chr11:66366400-66374400	Strong transcription	Placenta	Placenta
28	chr11:66366400-66374600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr11:66366400-66374600	Strong transcription	Fetal Intestine Small	intestine
30	chr11:66366400-66375000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:66366400-66375200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:66366400-66375200	Strong transcription	Primary T cells from cord blood	blood
33	chr11:66366400-66375200	Strong transcription	Fetal Thymus	thymus
34	chr11:66366400-66375600	Strong transcription	Thymus	Thymus
35	chr11:66366400-66376000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr11:66366600-66370200	Strong transcription	Brain Angular Gyrus	brain
37	chr11:66366600-66370400	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr11:66366600-66370800	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr11:66366600-66371000	Strong transcription	Sigmoid Colon	Sigmoid Colon
40	chr11:66366600-66373600	Strong transcription	Duodenum Mucosa	Duodenum
41	chr11:66366600-66373600	Strong transcription	Fetal Lung	lung
42	chr11:66366600-66374000	Strong transcription	Fetal Intestine Large	intestine
43	chr11:66366800-66370800	Strong transcription	Gastric	stomach
44	chr11:66367000-66370600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr11:66367000-66370600	Strong transcription	A549	lung
46	chr11:66367400-66369800	Weak transcription	Aorta	Aorta
47	chr11:66367400-66372200	Weak transcription	Hela-S3	cervix
48	chr11:66367400-66383400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr11:66367600-66370000	Enhancers	NHDF-Ad	bronchial
50	chr11:66367600-66370400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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