Variant report

Variant	rs34294578
Chromosome Location	chr8:104511409-104511410
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr8:104511294-104511518	GM12878	blood:	n/a	n/a
2	SIN3A	chr8:104510669-104514416	H1-hESC	embryonic stem cell:	n/a	chr8:104512440-104512453 chr8:104512690-104512703 chr8:104512322-104512335 chr8:104514131-104514145 chr8:104511737-104511746 chr8:104511075-104511086 chr8:104514132-104514141
3	CTCF	chr8:104511260-104511410	GM12864	blood:	n/a	n/a
4	POLR2A	chr8:104511003-104511550	ECC-1	luminal epithelium:	n/a	n/a
5	CHD2	chr8:104510982-104511610	H1-hESC	embryonic stem cell:	n/a	chr8:104511042-104511052
6	MAX	chr8:104510929-104511644	A549	lung:	n/a	chr8:104511045-104511055
7	MYC	chr8:104511332-104511584	H1-hESC	embryonic stem cell:	n/a	n/a
8	POLR2A	chr8:104511264-104511489	H1-hESC	embryonic stem cell:	n/a	n/a
9	CTCF	chr8:104511335-104511516	MCF-7	breast:	n/a	n/a
10	KAP1	chr8:104510793-104511435	HEK293	kidney:	n/a	n/a
11	E2F6	chr8:104510961-104511670	A549	lung:	n/a	chr8:104511230-104511247 chr8:104511044-104511053 chr8:104511234-104511245 chr8:104511234-104511249 chr8:104511237-104511244
12	CTCF	chr8:104511291-104511450	H1-hESC	embryonic stem cell:	n/a	n/a
13	MAX	chr8:104511209-104511960	H1-hESC	embryonic stem cell:	n/a	chr8:104511715-104511725
14	TAF1	chr8:104511119-104511446	H1-hESC	embryonic stem cell:	n/a	n/a
15	CTCF	chr8:104511260-104511410	WERI-Rb-1	eye:	n/a	n/a
16	E2F6	chr8:104511179-104511595	A549	lung:	n/a	chr8:104511230-104511247 chr8:104511234-104511245 chr8:104511234-104511249 chr8:104511237-104511244
17	CTCF	chr8:104511302-104511490	GM12891	blood:	n/a	n/a
18	CTCF	chr8:104511260-104511410	SK-N-SH_RA	brain:	n/a	n/a
19	MAX	chr8:104510510-104512074	HCT-116	colon:	n/a	chr8:104511715-104511725 chr8:104511045-104511055
20	YY1	chr8:104510742-104511495	HCT-116	colon:	n/a	chr8:104511103-104511112 chr8:104511044-104511053 chr8:104511071-104511080
21	POLR2A	chr8:104510722-104511846	HCT-116	colon:	n/a	n/a
22	TEAD4	chr8:104511268-104511652	H1-hESC	embryonic stem cell:	n/a	n/a
23	SIN3AK20	chr8:104510940-104511815	H1-hESC	embryonic stem cell:	n/a	n/a
24	POLR2A	chr8:104510628-104512178	HCT-116	colon:	n/a	n/a
25	CTCF	chr8:104511280-104511430	HepG2	liver:	n/a	n/a
26	CTCF	chr8:104511320-104511470	AG09319	gingival:	n/a	n/a
27	TBP	chr8:104511172-104511672	H1-hESC	embryonic stem cell:	n/a	n/a
28	MAX	chr8:104511103-104512351	H1-hESC	embryonic stem cell:	n/a	chr8:104511715-104511725
29	JUND	chr8:104510855-104511762	H1-hESC	embryonic stem cell:	n/a	chr8:104511470-104511479 chr8:104511040-104511049
30	CTCF	chr8:104511240-104511490	SAEC	small airway:	n/a	n/a
31	POLR2A	chr8:104511110-104511529	H1-hESC	embryonic stem cell:	n/a	n/a
32	MYC	chr8:104511345-104511631	MCF-7	breast:	n/a	n/a
33	HA-E2F1	chr8:104510610-104511673	MCF-7	breast:	n/a	chr8:104511230-104511247 chr8:104511044-104511053 chr8:104511234-104511245 chr8:104511234-104511249 chr8:104511237-104511244
34	ZNF263	chr8:104510341-104512321	HEK293-T-REx	kidney:	n/a	chr8:104510771-104510780 chr8:104511611-104511620
35	RAD21	chr8:104511115-104511953	H1-hESC	embryonic stem cell:	n/a	n/a
36	CTBP2	chr8:104510977-104513239	H1-hESC	embryonic stem cell:	n/a	n/a
37	RAD21	chr8:104510859-104511958	H1-hESC	embryonic stem cell:	n/a	n/a
38	CTCF	chr8:104511260-104511410	GM12871	blood:	n/a	n/a
39	TAF1	chr8:104511098-104511562	H1-hESC	embryonic stem cell:	n/a	n/a
40	TAF1	chr8:104511328-104512173	H1-neurons	neurons:	n/a	n/a
41	POLR2A	chr8:104511133-104511509	H1-hESC	embryonic stem cell:	n/a	n/a
42	TCF12	chr8:104510704-104512276	ECC-1	luminal epithelium:	n/a	chr8:104511704-104511711
43	MAX	chr8:104510619-104511995	MCF-7	breast:	n/a	chr8:104511715-104511725 chr8:104511045-104511055
44	CTCF	chr8:104511329-104511458	A549	lung:	n/a	n/a
45	POLR2A	chr8:104511151-104512401	H1-neurons	neurons:	n/a	n/a
46	CTCF	chr8:104511301-104511427	MCF-7	breast:	n/a	n/a
47	CTCF	chr8:104511260-104511410	AG10803	skin:	n/a	n/a
48	MAX	chr8:104510638-104511931	ECC-1	luminal epithelium:	n/a	chr8:104511715-104511725 chr8:104511045-104511055
49	CTCF	chr8:104511320-104511470	GM12871	blood:	n/a	n/a
50	MAX	chr8:104510720-104511782	ECC-1	luminal epithelium:	n/a	chr8:104511715-104511725 chr8:104511045-104511055

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:104424987..104428689-chr8:104510615..104514344,5	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC25A32-3	chr8:104511198-104511722	XLOC_007177
2	lnc-SLC25A32-3	chr8:104511115-104511783	NONHSAT128194
3	lnc-SLC25A32-3	chr8:104510404-104512975	NONHSAT128193

Variant related genes	Relation type
RIMS2	TF binding region
ENSG00000164933	Chromatin interaction
ENSG00000164934	Chromatin interaction

Extended variants
information (count: 310 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:299)

rs_ID	r²[population]
rs10086572	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10086723	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10086733	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10086828	0.88[EUR][1000 genomes]
rs10089162	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10089301	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10089491	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10090039	0.87[EUR][1000 genomes]
rs10091089	0.87[EUR][1000 genomes]
rs10091859	0.89[EUR][1000 genomes]
rs10093711	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10093848	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10094153	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10095409	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10097744	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10098555	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10098692	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10099408	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10101805	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10102124	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10102523	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10103024	0.89[EUR][1000 genomes]
rs10103086	0.89[EUR][1000 genomes]
rs10103311	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10104009	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10105191	0.89[EUR][1000 genomes]
rs10107074	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110162	0.87[EUR][1000 genomes]
rs10110202	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10112996	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10113157	0.86[EUR][1000 genomes]
rs1024875	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10505043	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10505044	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10505045	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10505046	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10955322	0.90[EUR][1000 genomes]
rs11774079	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11774130	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11775389	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11776535	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11776670	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11776707	0.89[EUR][1000 genomes]
rs11778502	0.89[EUR][1000 genomes]
rs11779973	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11780323	0.86[EUR][1000 genomes]
rs11780689	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11784812	0.89[EUR][1000 genomes]
rs11784855	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11785029	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11785034	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11785081	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11785526	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11786899	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11787083	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11787180	0.89[EUR][1000 genomes]
rs12334431	0.89[EUR][1000 genomes]
rs12334941	0.89[EUR][1000 genomes]
rs12335106	0.89[EUR][1000 genomes]
rs12335323	0.89[EUR][1000 genomes]
rs12707787	0.90[EUR][1000 genomes]
rs12707788	0.89[EUR][1000 genomes]
rs12707789	0.89[EUR][1000 genomes]
rs12707790	0.89[EUR][1000 genomes]
rs13248598	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13249502	0.89[EUR][1000 genomes]
rs13249922	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13250725	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13250891	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13251612	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13255147	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13257065	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13257474	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13257551	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13257740	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13257824	0.87[EUR][1000 genomes]
rs13257848	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13259857	0.89[EUR][1000 genomes]
rs13260896	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13261470	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13262003	0.89[EUR][1000 genomes]
rs13262235	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13262669	0.89[EUR][1000 genomes]
rs13262743	0.85[EUR][1000 genomes]
rs13263216	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13263306	0.89[EUR][1000 genomes]
rs13263630	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13263814	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13265161	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13265220	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13268468	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13269260	0.92[EUR][1000 genomes]
rs13272442	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13273311	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13274173	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13276150	0.89[EUR][1000 genomes]
rs13276817	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13277802	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13278213	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13278466	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13279952	0.89[EUR][1000 genomes]
rs13280576	0.89[EUR][1000 genomes]
rs13282559	0.94[EUR][1000 genomes]
rs13282604	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13439010	0.90[EUR][1000 genomes]
rs13439015	0.90[EUR][1000 genomes]
rs13439017	0.90[EUR][1000 genomes]
rs13439652	0.89[EUR][1000 genomes]
rs13439734	0.89[EUR][1000 genomes]
rs1426294	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1426296	0.89[EUR][1000 genomes]
rs1436603	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1521058	0.87[EUR][1000 genomes]
rs1582767	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1582768	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1582770	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1593491	0.89[EUR][1000 genomes]
rs1593492	0.89[EUR][1000 genomes]
rs1593493	0.89[EUR][1000 genomes]
rs16870445	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16870446	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16870502	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16870588	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16870614	0.89[EUR][1000 genomes]
rs16870616	0.89[EUR][1000 genomes]
rs17231472	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17234389	0.89[EUR][1000 genomes]
rs1820445	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1946370	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2080608	0.87[EUR][1000 genomes]
rs2111491	0.89[EUR][1000 genomes]
rs2111492	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2160713	0.89[EUR][1000 genomes]
rs2160715	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2388724	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28420723	0.89[EUR][1000 genomes]
rs28422794	0.89[EUR][1000 genomes]
rs28470319	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28482300	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28494061	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28502010	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28517319	0.89[EUR][1000 genomes]
rs28563855	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28567610	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28626315	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28693917	0.89[EUR][1000 genomes]
rs28754823	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28772965	0.87[EUR][1000 genomes]
rs28790017	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28846684	0.89[EUR][1000 genomes]
rs28857239	0.87[EUR][1000 genomes]
rs28862332	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28869329	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34067668	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34330341	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34333071	0.99[EUR][1000 genomes]
rs34344264	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34353892	0.89[EUR][1000 genomes]
rs34450887	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34478067	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34491577	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34579655	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34651893	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34668912	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34684719	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34709042	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34840668	0.90[EUR][1000 genomes]
rs34875493	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34883289	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34895491	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34903423	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34955447	0.89[EUR][1000 genomes]
rs34995326	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35052041	0.90[EUR][1000 genomes]
rs35142991	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35177572	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35196143	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35294891	0.89[EUR][1000 genomes]
rs35374727	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35400024	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35414368	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35519709	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35674658	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35692918	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35732252	0.89[EUR][1000 genomes]
rs35745105	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35745222	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35783108	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35802116	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35938494	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35941508	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36074579	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4001966	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4299973	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4310171	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4431562	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4520130	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4642610	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4642611	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55731986	0.87[EUR][1000 genomes]
rs56048621	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56345763	0.89[EUR][1000 genomes]
rs56999386	0.89[EUR][1000 genomes]
rs58594820	0.89[EUR][1000 genomes]
rs6468881	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6468882	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66767358	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66873473	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66926905	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66956359	0.86[EUR][1000 genomes]
rs67217645	0.97[EUR][1000 genomes]
rs67267315	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67282212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67533435	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68145832	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6980714	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983590	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6985202	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6985351	0.89[EUR][1000 genomes]
rs6985447	0.87[EUR][1000 genomes]
rs6986085	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6986283	0.88[EUR][1000 genomes]
rs6986935	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6987023	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6987885	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990927	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6991393	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6991695	0.89[EUR][1000 genomes]
rs6992377	0.89[EUR][1000 genomes]
rs6993208	0.86[EUR][1000 genomes]
rs6993536	0.87[EUR][1000 genomes]
rs6993909	0.87[EUR][1000 genomes]
rs6995288	0.90[EUR][1000 genomes]
rs6996896	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001794	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7002538	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7002805	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7002996	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7003098	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7003753	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7004369	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7004568	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7012874	0.89[EUR][1000 genomes]
rs7014784	0.87[EUR][1000 genomes]
rs7014799	0.87[EUR][1000 genomes]
rs7014867	0.85[EUR][1000 genomes]
rs7016210	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7016802	0.87[EUR][1000 genomes]
rs7016905	0.86[EUR][1000 genomes]
rs7018187	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71512488	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71520840	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71520842	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72675495	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7813100	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7817840	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7817973	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7818492	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7818497	0.89[EUR][1000 genomes]
rs7820965	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821398	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7822390	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7823940	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7824747	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7825033	0.94[EUR][1000 genomes]
rs7825184	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7825696	0.89[EUR][1000 genomes]
rs7825832	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7825842	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7825968	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7826021	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7827973	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7829735	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7830158	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7834353	0.89[EUR][1000 genomes]
rs7835266	0.89[EUR][1000 genomes]
rs7835792	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7836022	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7837980	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7838105	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7838295	0.87[EUR][1000 genomes]
rs7839383	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7840564	0.90[EUR][1000 genomes]
rs7841668	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7843709	0.89[EUR][1000 genomes]
rs7843860	0.89[EUR][1000 genomes]
rs7843928	0.89[EUR][1000 genomes]
rs7844923	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7845290	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297333	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297334	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297335	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297336	0.89[EUR][1000 genomes]
rs9297338	0.89[EUR][1000 genomes]
rs9772647	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9772699	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9773519	0.87[EUR][1000 genomes]
rs9774228	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9987225	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429931	chr8:104097396-104878014	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv1020476	chr8:104312212-104924482	Genic enhancers Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv539704	chr8:104312212-104924482	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1023048	chr8:104355188-104872701	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv539705	chr8:104355188-104872701	ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
6	nsv1021345	chr8:104361854-104879684	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv1032085	chr8:104362187-104878345	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	nsv1034183	chr8:104369940-104814008	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
9	nsv539707	chr8:104369940-104814008	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	esv2753239	chr8:104404824-104545824	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
11	esv3384862	chr8:104511126-104513424	Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104510400-104514200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:104510400-104514400	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr8:104510400-104514600	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr8:104510400-104514800	Active TSS	H1 Cell Line	embryonic stem cell
5	chr8:104510400-104515000	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr8:104510600-104511600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:104510600-104511600	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
8	chr8:104510600-104511800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:104510600-104511800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr8:104510600-104512600	Active TSS	Brain Cingulate Gyrus	brain
11	chr8:104510600-104513200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr8:104510600-104514200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr8:104510600-104514200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:104510600-104514200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr8:104510600-104514200	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr8:104510600-104514400	Active TSS	H9 Cell Line	embryonic stem cell
17	chr8:104510600-104514400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr8:104510600-104514600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
19	chr8:104510600-104514600	Active TSS	iPS-18 Cell Line	embryonic stem cell
20	chr8:104510600-104514800	Active TSS	iPS-15b Cell Line	embryonic stem cell
21	chr8:104510800-104511600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
22	chr8:104510800-104511600	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
23	chr8:104510800-104511800	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr8:104510800-104511800	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr8:104510800-104511800	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr8:104510800-104511800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
27	chr8:104510800-104511800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr8:104510800-104511800	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
29	chr8:104510800-104511800	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
30	chr8:104510800-104511800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
31	chr8:104510800-104511800	Flanking Bivalent TSS/Enh	Right Ventricle	heart
32	chr8:104510800-104511800	Bivalent Enhancer	Small Intestine	intestine
33	chr8:104510800-104511800	Flanking Active TSS	HMEC	breast
34	chr8:104510800-104511800	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
35	chr8:104510800-104512000	Active TSS	Breast Myoepithelial Primary Cells	Breast
36	chr8:104510800-104512000	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
37	chr8:104510800-104512400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
38	chr8:104510800-104512800	Active TSS	Brain Substantia Nigra	brain
39	chr8:104510800-104512800	Bivalent Enhancer	Fetal Thymus	thymus
40	chr8:104510800-104513000	Bivalent/Poised TSS	A549	lung
41	chr8:104510800-104513600	Bivalent/Poised TSS	HSMM	muscle
42	chr8:104510800-104513800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
43	chr8:104510800-104513800	Bivalent Enhancer	Spleen	Spleen
44	chr8:104510800-104514000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr8:104510800-104514200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr8:104510800-104514200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr8:104510800-104514200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr8:104510800-104514400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr8:104510800-104515000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr8:104511000-104511600	Flanking Active TSS	Primary hematopoietic stem cells	blood

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