Variant report

Variant	rs34295245
Chromosome Location	chr4:124903069-124903070
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:124902976..124905856-chr4:124908350..124910069,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1048174	0.81[ASN][1000 genomes]
rs1072812	0.80[AMR][1000 genomes]
rs11732972	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11735296	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs11941184	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11944441	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13106725	0.80[AMR][1000 genomes]
rs13117592	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13125072	0.87[AMR][1000 genomes]
rs13128086	0.80[AMR][1000 genomes]
rs13131552	0.80[AMR][1000 genomes]
rs13145600	0.80[AMR][1000 genomes]
rs13145647	0.80[AMR][1000 genomes]
rs13145840	0.80[AMR][1000 genomes]
rs13151047	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13152106	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1401528	0.80[AMR][1000 genomes]
rs1401529	0.80[AMR][1000 genomes]
rs1401530	0.80[AMR][1000 genomes]
rs1401531	0.80[AMR][1000 genomes]
rs1519224	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1519225	0.87[AMR][1000 genomes]
rs1519235	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1589203	0.80[AMR][1000 genomes]
rs1829425	0.80[AMR][1000 genomes]
rs1850753	0.80[AMR][1000 genomes]
rs1850754	0.80[AMR][1000 genomes]
rs1850755	0.80[AMR][1000 genomes]
rs1914902	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2390617	0.80[AMR][1000 genomes]
rs2390618	0.80[AMR][1000 genomes]
rs28773619	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2893068	0.80[AMR][1000 genomes]
rs34042194	0.80[AMR][1000 genomes]
rs34160919	0.80[AMR][1000 genomes]
rs34758288	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34947044	0.80[AMR][1000 genomes]
rs35096521	0.80[AMR][1000 genomes]
rs35402687	0.80[AMR][1000 genomes]
rs35795102	0.80[AMR][1000 genomes]
rs4833294	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4833963	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4833967	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6823887	0.80[AMR][1000 genomes]
rs6824226	0.80[AMR][1000 genomes]
rs6824286	0.80[AMR][1000 genomes]
rs6837861	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6842970	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6844147	0.80[AMR][1000 genomes]
rs73846824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs985573	0.87[AMR][1000 genomes]
rs9884540	0.87[AMR][1000 genomes]
rs9995358	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34581	chr4:124271321-125247395	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv830049	chr4:124793932-124955708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv879875	chr4:124821888-124904592	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv879876	chr4:124847477-124908231	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv879877	chr4:124847477-124935698	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv879878	chr4:124850901-124935698	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv879879	chr4:124893772-124971109	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:124893600-124903800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:124900800-124906800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:124901200-124903400	Enhancers	HUVEC	blood vessel
4	chr4:124902000-124903600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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