Variant report

Variant	rs34296197
Chromosome Location	chr17:34040543-34040544
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:34037578..34041296-chr17:34042610..34046006,5	K562	blood:
2	chr17:34024050..34027708-chr17:34038047..34041626,3	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11651380	0.82[AFR][1000 genomes]
rs11652390	0.82[AFR][1000 genomes]
rs11654542	0.82[AFR][1000 genomes]
rs11657558	0.91[AFR][1000 genomes]
rs12936693	0.82[AFR][1000 genomes]
rs12943224	0.82[AFR][1000 genomes]
rs12947274	0.82[AFR][1000 genomes]
rs12950534	0.90[AFR][1000 genomes]
rs17608253	0.91[AFR][1000 genomes]
rs17670584	0.82[AFR][1000 genomes]
rs34528380	0.90[AFR][1000 genomes]
rs34874930	0.82[AFR][1000 genomes]
rs3506	0.82[AFR][1000 genomes]
rs35396673	1.00[AFR][1000 genomes]
rs35419374	0.90[AFR][1000 genomes]
rs35515868	0.82[AFR][1000 genomes]
rs35672532	0.91[AFR][1000 genomes]
rs35872249	0.90[AFR][1000 genomes]
rs71381464	0.81[AFR][1000 genomes]
rs71381465	0.82[AFR][1000 genomes]
rs71381467	0.91[AFR][1000 genomes]
rs71381469	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
2	nsv908080	chr17:34027964-34054044	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33968000-34055800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr17:33999400-34043400	Weak transcription	Fetal Brain Male	brain
3	chr17:34018800-34050600	Weak transcription	Esophagus	oesophagus
4	chr17:34019000-34044000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr17:34022200-34042400	Weak transcription	Aorta	Aorta
6	chr17:34023200-34043800	Weak transcription	Spleen	Spleen
7	chr17:34023200-34044000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr17:34023200-34051600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr17:34023400-34044200	Weak transcription	Brain Germinal Matrix	brain
10	chr17:34024200-34056200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr17:34026600-34050200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr17:34032600-34055800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr17:34034600-34041000	Strong transcription	Dnd41	blood
14	chr17:34034800-34053400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr17:34034800-34055600	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr17:34035400-34056200	Strong transcription	A549	lung
17	chr17:34035800-34053000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr17:34036000-34040800	Strong transcription	K562	blood
19	chr17:34036000-34041800	Strong transcription	Fetal Stomach	stomach
20	chr17:34036000-34045800	Strong transcription	Fetal Muscle Trunk	muscle
21	chr17:34036000-34047400	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr17:34036000-34049000	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr17:34036000-34055600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr17:34036200-34041600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr17:34036200-34044000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr17:34036400-34042600	Weak transcription	Gastric	stomach
27	chr17:34036400-34042600	Weak transcription	Pancreas	Pancrea
28	chr17:34036400-34052200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr17:34036600-34055800	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr17:34036800-34054800	Strong transcription	Primary B cells from peripheral blood	blood
31	chr17:34037000-34047400	Strong transcription	Primary B cells from cord blood	blood
32	chr17:34037000-34053000	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr17:34037200-34042600	Weak transcription	Rectal Smooth Muscle	rectum
34	chr17:34037200-34044000	Weak transcription	Colon Smooth Muscle	Colon
35	chr17:34037200-34044800	Strong transcription	HMEC	breast
36	chr17:34037400-34040800	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr17:34037400-34041000	Strong transcription	NHEK	skin
38	chr17:34038000-34044000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr17:34038200-34040800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
40	chr17:34038400-34042200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr17:34038400-34042400	Weak transcription	Brain Cingulate Gyrus	brain
42	chr17:34038400-34042400	Weak transcription	Brain Hippocampus Middle	brain
43	chr17:34038600-34043400	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr17:34038800-34040800	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr17:34038800-34040800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
46	chr17:34039000-34040600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr17:34039000-34041400	Weak transcription	Colonic Mucosa	Colon
48	chr17:34039000-34042600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr17:34039000-34043600	Weak transcription	Brain Angular Gyrus	brain
50	chr17:34039200-34040600	Genic enhancers	Primary T cells fromperipheralblood	blood

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