Variant report

Variant	rs34296258
Chromosome Location	chr7:6284545-6284546
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:6275204..6278104-chr7:6282506..6285011,2	MCF-7	breast:
2	chr7:6283506..6285010-chr7:6286517..6288357,2	K562	blood:
3	chr7:6283219..6284762-chr7:6288057..6290958,2	MCF-7	breast:
4	chr7:6267164..6269525-chr7:6282564..6284921,2	K562	blood:
5	chr7:6283396..6285199-chr7:6286094..6287914,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11980829	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533108	chr7:5488018-6316581	Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	390 gene(s)	inside rSNPs	diseases
2	nsv948912	chr7:5803903-6623553	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
3	nsv1034060	chr7:5814823-6745710	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
4	nsv538711	chr7:5814823-6745710	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
5	nsv1028242	chr7:5819084-6645024	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
6	nsv538712	chr7:5819084-6645024	Weak transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
7	nsv949531	chr7:5949371-6753694	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
8	nsv1021037	chr7:6070792-6426966	Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
9	nsv538713	chr7:6070792-6426966	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
10	nsv530989	chr7:6176729-6438197	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
11	nsv482829	chr7:6231809-6407606	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv1032987	chr7:6246313-6373054	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv538714	chr7:6246313-6373054	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
14	nsv1020236	chr7:6248930-6690377	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:6268800-6285000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:6269200-6288000	Weak transcription	NHEK	skin
3	chr7:6272600-6285800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:6273000-6285000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr7:6273000-6286600	Weak transcription	HSMMtube	muscle
6	chr7:6274400-6285400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr7:6274400-6289400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr7:6274400-6296000	Weak transcription	Primary B cells from cord blood	blood
9	chr7:6275000-6285000	Weak transcription	Right Atrium	heart
10	chr7:6275000-6287400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr7:6275000-6288000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr7:6275000-6296000	Weak transcription	Fetal Intestine Small	intestine
13	chr7:6275200-6285800	Weak transcription	HSMM	muscle
14	chr7:6275400-6286000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr7:6275800-6285400	Weak transcription	Fetal Muscle Leg	muscle
16	chr7:6275800-6285800	Weak transcription	Fetal Stomach	stomach
17	chr7:6277000-6285800	Weak transcription	Ovary	ovary
18	chr7:6277000-6286600	Weak transcription	Psoas Muscle	Psoas
19	chr7:6277600-6285000	Weak transcription	Aorta	Aorta
20	chr7:6278400-6286200	Weak transcription	A549	lung
21	chr7:6280800-6284800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr7:6281200-6285000	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr7:6281200-6288200	Weak transcription	K562	blood
24	chr7:6281200-6296000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr7:6281400-6285200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr7:6281400-6288000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr7:6282600-6285000	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr7:6282800-6285000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr7:6282800-6285000	Weak transcription	Left Ventricle	heart
30	chr7:6282800-6285200	Weak transcription	Osteobl	bone
31	chr7:6282800-6285400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr7:6282800-6285800	Weak transcription	NH-A	brain
33	chr7:6282800-6287800	Weak transcription	HMEC	breast
34	chr7:6283000-6285000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr7:6283000-6285000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr7:6283000-6285000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr7:6283000-6285200	Weak transcription	Right Ventricle	heart
38	chr7:6283000-6286000	Weak transcription	NHDF-Ad	bronchial
39	chr7:6283000-6286000	Weak transcription	NHLF	lung
40	chr7:6283000-6287400	Weak transcription	Lung	lung
41	chr7:6283000-6288000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr7:6283000-6288000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr7:6283200-6285000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr7:6283200-6285200	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr7:6283200-6286800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr7:6283200-6288000	Weak transcription	Esophagus	oesophagus
47	chr7:6283600-6288000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr7:6283800-6286000	Enhancers	Placenta	Placenta
49	chr7:6284000-6284800	Weak transcription	GM12878-XiMat	blood
50	chr7:6284000-6286800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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