Variant report

Variant	rs34297443
Chromosome Location	chr10:97413685-97413686
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97408175..97410101-chr10:97411776..97414695,3	MCF-7	breast:
2	chr10:97411958..97414556-chr10:97414784..97416588,2	MCF-7	breast:
3	chr10:97403144..97405110-chr10:97412566..97414217,2	K562	blood:

Variant related genes	Relation type
ENSG00000059573	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10509688	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882658	0.89[AFR][1000 genomes]
rs11188426	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11188427	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12414244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12414904	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12768006	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12769303	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12773566	0.95[ASN][1000 genomes]
rs12783226	0.89[AFR][1000 genomes]
rs1933164	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2485642	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3176894	0.83[AFR][1000 genomes]
rs35087577	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs476392	0.81[ASN][1000 genomes]
rs483920	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4918949	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4918959	0.89[AFR][1000 genomes]
rs4918965	0.84[AFR][1000 genomes]
rs561156	0.81[ASN][1000 genomes]
rs568401	0.81[ASN][1000 genomes]
rs7090916	0.89[AFR][1000 genomes]
rs72813744	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34297443	ENTPD1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97376400-97415200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:97376600-97415000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr10:97378600-97414200	Weak transcription	Fetal Heart	heart
4	chr10:97401000-97415200	Weak transcription	Colon Smooth Muscle	Colon
5	chr10:97402200-97415200	Weak transcription	Right Ventricle	heart
6	chr10:97402800-97415200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr10:97403000-97414400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr10:97403000-97415400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:97404000-97413800	Strong transcription	Fetal Muscle Leg	muscle
10	chr10:97404600-97413800	Strong transcription	Fetal Stomach	stomach
11	chr10:97404800-97415200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr10:97406400-97415200	Weak transcription	Brain Angular Gyrus	brain
13	chr10:97407600-97414200	Weak transcription	Stomach Mucosa	stomach
14	chr10:97407800-97415400	Weak transcription	Small Intestine	intestine
15	chr10:97409000-97415200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:97410800-97413800	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr10:97411000-97413800	Strong transcription	Muscle Satellite Cultured Cells	--
18	chr10:97411200-97413800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
19	chr10:97411400-97415200	Weak transcription	Lung	lung
20	chr10:97411600-97415400	Weak transcription	Esophagus	oesophagus
21	chr10:97411600-97415400	Weak transcription	Psoas Muscle	Psoas
22	chr10:97411600-97415600	Weak transcription	Thymus	Thymus
23	chr10:97411600-97415600	Weak transcription	Spleen	Spleen
24	chr10:97411800-97413800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr10:97411800-97413800	Strong transcription	K562	blood
26	chr10:97411800-97413800	Strong transcription	NHEK	skin
27	chr10:97411800-97414400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr10:97411800-97414600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr10:97411800-97414600	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr10:97411800-97415000	Weak transcription	Colonic Mucosa	Colon
31	chr10:97411800-97415000	Weak transcription	Fetal Lung	lung
32	chr10:97411800-97415200	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr10:97411800-97415200	Weak transcription	Brain Hippocampus Middle	brain
34	chr10:97411800-97415200	Weak transcription	Rectal Smooth Muscle	rectum
35	chr10:97411800-97415200	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr10:97411800-97415400	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr10:97411800-97415400	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr10:97412000-97413800	Strong transcription	Primary B cells from cord blood	blood
39	chr10:97412000-97414400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr10:97412000-97414400	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr10:97412000-97414600	Weak transcription	NHDF-Ad	bronchial
42	chr10:97412000-97415000	Weak transcription	Fetal Kidney	kidney
43	chr10:97412000-97415000	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr10:97412000-97415200	Weak transcription	Brain Anterior Caudate	brain
45	chr10:97412000-97415400	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr10:97412000-97415600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr10:97412200-97413800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr10:97412200-97414200	Weak transcription	Fetal Brain Male	brain
49	chr10:97412200-97414600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr10:97412200-97415000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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