Variant report
| Variant | rs34311973 |
|---|---|
| Chromosome Location | chr7:98743934-98743935 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr7:98743526-98743976 | MCF10A-Er-Src | breast: | n/a | n/a |
| 2 | POLR2A | chr7:98743444-98744150 | PANC-1 | pancreas: | n/a | n/a |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:98742101..98744840-chr7:98747144..98750541,3 | K562 | blood: | |
| 2 | chr7:98739425..98742547-chr7:98743617..98746560,5 | K562 | blood: | |
| 3 | chr7:98738148..98740026-chr7:98743359..98745839,2 | MCF-7 | breast: | |
| 4 | chr7:98738526..98746153-chr7:98804876..98809686,18 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| SMURF1 | TF binding region |
| ENSG00000185467 | Chromatin interaction |
| ENSG00000198742 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10237900 | 0.84[EUR][1000 genomes] |
| rs10245912 | 0.84[EUR][1000 genomes] |
| rs10280956 | 0.84[EUR][1000 genomes] |
| rs10281925 | 0.84[EUR][1000 genomes] |
| rs12705026 | 0.85[ASN][1000 genomes] |
| rs13234987 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs13235702 | 0.86[EUR][1000 genomes] |
| rs13243515 | 0.84[EUR][1000 genomes] |
| rs13243638 | 0.84[EUR][1000 genomes] |
| rs17161604 | 0.84[EUR][1000 genomes] |
| rs28592685 | 0.84[EUR][1000 genomes] |
| rs34175806 | 0.84[EUR][1000 genomes] |
| rs34281805 | 0.84[EUR][1000 genomes] |
| rs34370403 | 0.84[EUR][1000 genomes] |
| rs34438515 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34723720 | 0.86[EUR][1000 genomes] |
| rs35072460 | 0.84[EUR][1000 genomes] |
| rs35236657 | 0.84[EUR][1000 genomes] |
| rs35957782 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6465741 | 0.84[EUR][1000 genomes] |
| rs71567525 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024529 | chr7:98194830-98793518 | Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| 2 | nsv539036 | chr7:98194830-98793518 | Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| 3 | esv2755119 | chr7:98721885-98800145 | Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 15 gene(s) | inside rSNPs | diseases |
| 4 | esv1792421 | chr7:98737119-98752081 | Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 15 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:98742400-98744600 | Weak transcription | Right Atrium | heart |
| 2 | chr7:98743200-98744600 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
