Variant report
| Variant | rs34313835 |
|---|---|
| Chromosome Location | chr2:76703706-76703707 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs1401842 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs17012803 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs35375870 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs35540565 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs35635895 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs36000898 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs4384815 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs62165983 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs62165986 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs62165987 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs62166036 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs62166037 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs62166040 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs62166051 | 1.00[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs62166052 | 1.00[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs62166662 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62166720 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs62166722 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs62166726 | 0.94[EUR][1000 genomes] |
| rs62167490 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2757809 | chr2:76541920-76705354 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv2759064 | chr2:76541920-76705354 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv874317 | chr2:76554077-76890567 | Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1013614 | chr2:76624220-76715121 | Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv582227 | chr2:76662404-76712789 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | esv3356431 | chr2:76697346-76714281 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:76694800-76705800 | Weak transcription | H1 Cell Line | embryonic stem cell |
| 2 | chr2:76701200-76705400 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
