Variant report

Variant	rs343172
Chromosome Location	chr4:121810497-121810498
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11098590	1.00[EUR][1000 genomes]
rs11098591	1.00[EUR][1000 genomes]
rs1450460	1.00[EUR][1000 genomes]
rs1551079	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs168224	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs168225	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17051273	1.00[JPT][hapmap]
rs17051279	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs17051281	1.00[EUR][1000 genomes]
rs2167204	1.00[EUR][1000 genomes]
rs2390060	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs2667195	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs28611188	1.00[EUR][1000 genomes]
rs3114956	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3115311	0.80[YRI][hapmap];0.85[AFR][1000 genomes]
rs3115316	0.98[AFR][1000 genomes]
rs343167	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs343168	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs343169	1.00[CEU][hapmap];0.82[JPT][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs343170	0.88[YRI][hapmap];0.93[AFR][1000 genomes]
rs343171	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs343193	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs343196	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs343199	0.87[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4274874	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs72923591	1.00[EUR][1000 genomes]
rs7681598	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv980152	chr4:121807702-121817738	ZNF genes & repeats Weak transcription Strong transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121796400-121824400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr4:121797000-121823800	Weak transcription	Osteobl	bone
3	chr4:121798200-121842400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:121798800-121810600	Weak transcription	Fetal Intestine Small	intestine
5	chr4:121798800-121814000	Weak transcription	Fetal Intestine Large	intestine
6	chr4:121799200-121811200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:121801200-121814400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:121802200-121826600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:121802600-121813800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:121802800-121813800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr4:121803200-121813600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:121803400-121810800	Weak transcription	Fetal Muscle Leg	muscle
13	chr4:121803400-121813800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:121803400-121813800	Weak transcription	Pancreas	Pancrea
15	chr4:121803400-121822600	Weak transcription	Aorta	Aorta
16	chr4:121803400-121827400	Weak transcription	NHDF-Ad	bronchial
17	chr4:121804200-121822400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr4:121804800-121830200	Weak transcription	Fetal Heart	heart
19	chr4:121807400-121813800	Weak transcription	Ovary	ovary
20	chr4:121808600-121810600	Weak transcription	Left Ventricle	heart
21	chr4:121808600-121810800	Weak transcription	Psoas Muscle	Psoas
22	chr4:121808800-121811000	Weak transcription	Fetal Lung	lung

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