Variant report

Variant	rs343179
Chromosome Location	chr4:121769493-121769494
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:121763712..121766459-chr4:121767957..121770236,3	MCF-7	breast:
2	chr4:121769272..121771821-chr4:121774320..121777055,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1033097	1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11736662	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1511301	0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1511306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1567552	1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1567553	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs171067	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs343175	0.92[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6844456	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1013704	chr4:121657648-121791601	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121729600-121770400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr4:121755800-121774600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr4:121756800-121779800	Weak transcription	Aorta	Aorta
4	chr4:121758200-121770400	Weak transcription	HSMM	muscle
5	chr4:121758200-121774600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr4:121759600-121775400	Weak transcription	Gastric	stomach
7	chr4:121760400-121775800	Weak transcription	Lung	lung
8	chr4:121761200-121778200	Weak transcription	Fetal Muscle Leg	muscle
9	chr4:121761200-121783600	Weak transcription	Pancreas	Pancrea
10	chr4:121761400-121774600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:121761400-121777600	Weak transcription	Left Ventricle	heart
12	chr4:121763400-121778800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr4:121763600-121776600	Weak transcription	Fetal Stomach	stomach
14	chr4:121763800-121769800	Weak transcription	Osteobl	bone
15	chr4:121763800-121770400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr4:121763800-121771000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:121763800-121776600	Weak transcription	Fetal Heart	heart
18	chr4:121764000-121770000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:121764400-121769600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr4:121765800-121786600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr4:121766000-121776600	Weak transcription	Fetal Intestine Small	intestine
22	chr4:121766000-121786600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr4:121766200-121769600	Weak transcription	NHDF-Ad	bronchial
24	chr4:121766200-121790800	Weak transcription	Ovary	ovary
25	chr4:121766400-121776600	Weak transcription	Fetal Intestine Large	intestine
26	chr4:121768800-121769800	Weak transcription	Fetal Lung	lung
27	chr4:121769000-121774600	Weak transcription	Fetal Kidney	kidney
28	chr4:121769000-121779600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr4:121769200-121779600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr4:121769400-121770800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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