Variant report

Variant	rs34321445
Chromosome Location	chr4:79179929-79179930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10008653	0.93[ASN][1000 genomes]
rs10010118	0.88[EUR][1000 genomes]
rs10015504	0.80[ASN][1000 genomes]
rs1017649	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10223012	0.83[EUR][1000 genomes]
rs10461146	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11730296	0.85[EUR][1000 genomes]
rs11736213	0.88[EUR][1000 genomes]
rs12500443	0.89[ASN][1000 genomes]
rs12501798	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12502139	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12502685	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12502886	0.81[ASN][1000 genomes]
rs12504081	0.93[ASN][1000 genomes]
rs12506036	0.89[ASN][1000 genomes]
rs12511360	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12511808	0.88[ASN][1000 genomes]
rs13107378	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13108102	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13114110	0.83[ASN][1000 genomes]
rs13117388	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13136648	0.93[ASN][1000 genomes]
rs13138795	0.93[ASN][1000 genomes]
rs1378239	0.88[EUR][1000 genomes]
rs1454892	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1454898	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1454899	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1484344	0.93[ASN][1000 genomes]
rs17455826	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1840391	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1840392	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2008786	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2124143	0.88[ASN][1000 genomes]
rs2124144	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2168203	0.81[ASN][1000 genomes]
rs2198635	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28737438	0.93[ASN][1000 genomes]
rs34398622	0.81[ASN][1000 genomes]
rs34535077	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34595864	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35290872	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35291597	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35419939	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35683023	0.88[EUR][1000 genomes]
rs35828300	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4859918	0.81[ASN][1000 genomes]
rs4859920	0.81[ASN][1000 genomes]
rs4859923	0.85[EUR][1000 genomes]
rs4859924	0.85[EUR][1000 genomes]
rs58101131	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62309861	0.91[ASN][1000 genomes]
rs62310017	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62310021	0.86[ASN][1000 genomes]
rs62310023	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62310045	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6533565	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6533571	0.85[EUR][1000 genomes]
rs6815945	0.93[ASN][1000 genomes]
rs6854043	0.87[EUR][1000 genomes]
rs6854207	0.91[ASN][1000 genomes]
rs6856362	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72657047	0.91[ASN][1000 genomes]
rs7656032	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7681247	0.88[ASN][1000 genomes]
rs7686297	0.88[ASN][1000 genomes]
rs7694740	0.81[ASN][1000 genomes]
rs7696792	0.86[EUR][1000 genomes]
rs9307359	0.83[EUR][1000 genomes]
rs943821	0.93[ASN][1000 genomes]
rs943822	0.93[ASN][1000 genomes]
rs9762380	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9994502	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv525530	chr4:79024524-79266563	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1010782	chr4:79057839-79387207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv829978	chr4:79144453-79291868	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79169200-79186200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:79169200-79187400	Weak transcription	HSMMtube	muscle
3	chr4:79169600-79187800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr4:79169800-79197400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:79169800-79213800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:79170400-79186000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr4:79173800-79186200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr4:79173800-79187000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:79173800-79187400	Weak transcription	Fetal Stomach	stomach
10	chr4:79174600-79186000	Weak transcription	Fetal Lung	lung
11	chr4:79174600-79197400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr4:79174800-79214400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:79175000-79187600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr4:79175000-79188000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr4:79175200-79185800	Weak transcription	Fetal Kidney	kidney
16	chr4:79176400-79191000	Weak transcription	Psoas Muscle	Psoas
17	chr4:79176600-79183200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:79176600-79186200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr4:79176600-79186200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr4:79176600-79186200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr4:79176600-79186200	Weak transcription	Fetal Intestine Large	intestine
22	chr4:79176600-79186600	Weak transcription	Fetal Intestine Small	intestine
23	chr4:79176600-79187200	Weak transcription	Left Ventricle	heart
24	chr4:79176600-79189200	Weak transcription	Fetal Heart	heart
25	chr4:79177600-79187400	Weak transcription	Pancreas	Pancrea
26	chr4:79177800-79186200	Weak transcription	HepG2	liver
27	chr4:79178600-79186000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr4:79179800-79182000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr4:79179800-79182400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr4:79179800-79182400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr4:79179800-79183000	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr4:79179800-79184600	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr4:79179800-79185600	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr4:79179800-79185800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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