Variant report

Variant	rs34331188
Chromosome Location	chr1:222990465-222990466
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11485186	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11486081	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17163517	0.84[ASN][1000 genomes]
rs35264472	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35970216	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36054388	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71644707	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999185	chr1:222500725-223278032	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv535304	chr1:222500725-223278032	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	nsv873206	chr1:222985197-223124916	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222989000-222990800	Weak transcription	Small Intestine	intestine
2	chr1:222989000-222999200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:222989200-222990600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr1:222989200-222990800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:222989200-222990800	Weak transcription	Primary B cells from peripheral blood	blood
6	chr1:222989200-222990800	Weak transcription	Aorta	Aorta
7	chr1:222989200-222991000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:222989200-222991000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:222989200-222991400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr1:222989200-222991400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr1:222989200-222992400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:222989200-222992400	Weak transcription	Ovary	ovary
13	chr1:222989200-222992400	Enhancers	Rectal Smooth Muscle	rectum
14	chr1:222989200-222993000	Weak transcription	Fetal Thymus	thymus
15	chr1:222989200-222994000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr1:222989200-222997600	Weak transcription	Fetal Brain Male	brain
17	chr1:222989200-222999000	Weak transcription	Lung	lung
18	chr1:222989400-222990600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr1:222989400-222990600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr1:222989400-222990600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr1:222989400-222990600	Weak transcription	GM12878-XiMat	blood
22	chr1:222989400-222990600	Weak transcription	HMEC	breast
23	chr1:222989400-222990800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr1:222989400-222990800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr1:222989400-222990800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr1:222989400-222990800	Weak transcription	A549	lung
27	chr1:222989400-222991000	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr1:222989400-222991000	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr1:222989400-222991000	Enhancers	HepG2	liver
30	chr1:222989400-222991200	Enhancers	Fetal Intestine Large	intestine
31	chr1:222989400-222991800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr1:222989400-222991800	Enhancers	HUVEC	blood vessel
33	chr1:222989400-222992000	Enhancers	Fetal Lung	lung
34	chr1:222989400-222992000	Enhancers	NHDF-Ad	bronchial
35	chr1:222989400-222993800	Weak transcription	Adipose Nuclei	Adipose
36	chr1:222989400-222996800	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr1:222989400-222999000	Weak transcription	Stomach Mucosa	stomach
38	chr1:222989400-223002800	Weak transcription	Fetal Intestine Small	intestine
39	chr1:222989400-223026800	Weak transcription	Fetal Muscle Leg	muscle
40	chr1:222989600-222990800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
41	chr1:222989600-222991000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr1:222989800-222990600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr1:222989800-222990800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr1:222989800-222991000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr1:222989800-222991000	Enhancers	Fetal Brain Female	brain
46	chr1:222989800-222991200	Weak transcription	Stomach Smooth Muscle	stomach
47	chr1:222989800-222991400	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr1:222989800-222992200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr1:222989800-222992400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr1:222989800-222992400	Enhancers	Hela-S3	cervix

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