Variant report

Variant	rs34332574
Chromosome Location	chr8:78916938-78916939
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs34559574	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34850235	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35838126	0.84[ASN][1000 genomes]
rs60610429	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62508225	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7012558	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9643731	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752267	chr8:78661586-78995994	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1034645	chr8:78782998-78996230	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv891054	chr8:78785042-78935739	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:78914200-78919800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr8:78916200-78921200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:78916200-78921200	Weak transcription	Brain Germinal Matrix	brain
4	chr8:78916200-78922000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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